AT2G17250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : CCAAT-binding factor | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2762 (EMB2762); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:7499573..7502957 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65352.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.41 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 577 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASILSKKQK KNEKYTLKEL KSLGHDLLTS RSHINNLPLL LTFVSPESPP QFVVESLLSL QSFFTPLLSQ LPPTSSSPSS TKTEDPEVVF KAWLRSKFDE 101: FVKLLLDVLV SQQSEDSLRG IVLGTLMEFV KLLNAGRFHS SIYHRLLDAI IHSEVDIEIF LDILTSKYFK YIDVRYFTYI SMEKFVKTLE ASVSADRTVI 201: ENNEAESDSK ESLELSVRKI YQVLSQIPPP EKQAEKSQHE MWSGSDESIS EKPTDKKKKT EKGDSTLLSP ATISKRMKLK FTKAWISFLR LPLPIDVYKE 301: VLASIHLTVI PHLSNPTMLC DFLTKSYDIG GVVSVMALSS LFILMTQHGL EYPFFYEKLY ALLVPSVFVA KHRAKFLQLL DACLKSSMLP AYLAASFTKK 401: LSRLSLSIPP AGSLVITALI YNLLRRNPTI NHLVQEIVEN ADEANTEAGE HNESQPKTIK KRKLGIDYFN NQESDPKKSG ALKSSLWEID TLRHHYCPPV 501: SRFISSLETN LTIRSKTTEM KIEDFCSGSY ATIFGDEIRR RVKQVPLAFY KTVPTSLFAD SDFPGWTFTI PQEEGTC |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)