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AT4G01560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal RNA processing Brix domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 49 (MEE49); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G63780.1); Has 893 Blast hits to 882 proteins in 227 species: Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 337; Plants - 121; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2136eggNOG:KOG2780EMBL:AL161492EMBL:AY050341
EMBL:AY086463EMBL:BT020609EMBL:CP002687EnsemblPlants:AT4G01560
EnsemblPlants:AT4G01560.1entrez:828136Gene3D:3.40.50.10480GeneID:828136
GO:GO:0000027GO:GO:0000460GO:GO:0000470GO:GO:0005730
GO:GO:0005829GO:GO:0009793GO:GO:0030687GO:GO:0042134
Gramene:AT4G01560.1hmmpanther:PTHR22734hmmpanther:PTHR22734:SF3HOGENOM:HOG000172062
InterPro:IPR004154InterPro:IPR007109KEGG:ath:AT4G01560KO:K14846
OMA:HAMESRRPfam:PF04427Pfscan:PS50833PhylomeDB:Q9M125
PIR:C85020PROSITE:PS50833Proteomes:UP000006548RefSeq:NP_567213.1
SMART:SM00879STRING:3702.AT4G01560.1SUPFAM:SSF52954TAIR:AT4G01560
tair10-symbols:MEE49UniGene:At.3828UniProt:Q9M125
Coordinates (TAIR10) chr4:-:677266..679164
Molecular Weight (calculated) 39849.80 Da
IEP (calculated) 10.36
GRAVY (calculated) -0.88
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFKRKKDDG DGEEMESDVR GKSTFSGGEK RNVILPSMIK NKDKRSKVYA KQKHEKKLEK QKKIRARDAA EKRALELGEE PPQKMIPKTI ENTRESDETV
101: CRPDDEELFA DIDADEFNPV LRREIAPKVL LTTCRFNSTR GPALISELLS VIPNSHYQKR GTYDLKKIVE YATKKDFTSL IVVHTNRREP DALLIIGLPN
201: GPTAHFKLSN LVLRKDIKNH GNPTSHQPEL VLNNFTTRLG NRVGRFFQSL FPPDPNFRGR RVVTFHNQRD FIFFRHHRYI FETKESKSDK GKEETIKPRL
301: QECGPRFTLK LVTLQHGTFD TKGGEFEWVH KPEMDTSRRR FFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)