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AT2G45280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAS associated with diabetes protein 51C
Curator
Summary (TAIR10)
Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.
Computational
Description (TAIR10)
RAS associated with diabetes protein 51C (RAD51C); CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT3G22880.1); Has 5546 Blast hits to 5533 proteins in 2007 species: Archae - 678; Bacteria - 2546; Metazoa - 757; Fungi - 474; Plants - 412; Viruses - 0; Other Eukaryotes - 679 (source: NCBI BLink).
Protein Annotations
EMBL:AB062456EMBL:AB073493EMBL:AC002387EMBL:AJ296174
EMBL:AJ299424EMBL:AK118275EMBL:AY078935EMBL:CP002685
EnsemblPlants:AT2G45280EnsemblPlants:AT2G45280.1entrez:819136ExpressionAtlas:Q8GXF0
Gene3D:3.40.50.300GeneID:819136Genevisible:Q8GXF0GO:GO:0003677
GO:GO:0005524GO:GO:0005634GO:GO:0006281GO:GO:0006310
GO:GO:0008094hmmpanther:PTHR22942hmmpanther:PTHR22942:SF14HOGENOM:HOG000227426
InParanoid:Q8GXF0InterPro:IPR010995InterPro:IPR013632InterPro:IPR016467
InterPro:IPR020588InterPro:IPR027417Pfam:PF08423Pfam:Q8GXF0
Pfscan:PS50162PhylomeDB:Q8GXF0PIR:F84888PIRSF:PIRSF005856
PRIDE:Q8GXF0PRO:PR:Q8GXF0PROSITE:PS50162ProteinModelPortal:Q8GXF0
Proteomes:UP000006548Reactome:R-ATH-5693579Reactome:R-ATH-5693616Reactome:R-ATH-983231
RefSeq:NP_566040.1SMR:Q8GXF0SUPFAM:SSF47794SUPFAM:SSF52540
TAIR:AT2G45280tair10-symbols:ATRAD51Ctair10-symbols:RAD51CUniGene:At.10169
UniGene:At.67845UniProt:Q8GXF0
Coordinates (TAIR10) chr2:+:18670103..18672041
Molecular Weight (calculated) 40217.10 Da
IEP (calculated) 6.00
GRAVY (calculated) -0.15
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MISFGRRKSP AIEETSLATS VMEAWRLPLS PSIRGKLISA GYTCLSSIAS VSSSDLARDA NITEEEAFEI LKLANQSCCN GSRSLINGAK NAWDMLHEEE
101: SLPRITTSCS DLDNILGGGI SCRDVTEIGG VPGIGKTQIG IQLSVNVQIP RECGGLGGKA IYIDTEGSFM VERALQIAEA CVEDMEEYTG YMHKHFQANQ
201: VQMKPEDILE NIFYFRVCSY TEQIALVNHL EKFISENKDV KVVIVDSITF HFRQDYDDLA QRTRVLSEMA LKFMKLAKKF SLAVVLLNQV TTKFSEGSFQ
301: LALALGDSWS HSCTNRVILY WNGDERYAYI DKSPSLPSAS ASYTVTSRGL RNSSSSSKRV KMM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)