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AT3G15260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.660
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G28400.1); Has 7163 Blast hits to 7153 proteins in 719 species: Archae - 10; Bacteria - 860; Metazoa - 1589; Fungi - 784; Plants - 2679; Viruses - 11; Other Eukaryotes - 1230 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15260-MONOMERBioCyc:ARA:GQT-1952-MONOMERBioGrid:6091EC:3.1.3.16
eggNOG:COG0631eggNOG:KOG0698EMBL:AK117480EMBL:AP000413
EMBL:AY120770EMBL:BT008532EMBL:CP002686EnsemblPlants:AT3G15260
EnsemblPlants:AT3G15260.1EnsemblPlants:AT3G15260.2entrez:820757Gene3D:3.60.40.10
GeneID:820757Genevisible:Q9LDA7GO:GO:0004722GO:GO:0046872
Gramene:AT3G15260.1Gramene:AT3G15260.2hmmpanther:PTHR13832hmmpanther:PTHR13832:SF333
HOGENOM:HOG000233896InParanoid:Q9LDA7IntAct:Q9LDA7InterPro:IPR001932
InterPro:IPR015655iPTMnet:Q9LDA7KEGG:ath:AT3G15260MINT:MINT-8390618
OMA:AFHEMEDPANTHER:PTHR13832PaxDb:Q9LDA7Pfam:PF00481
Pfam:Q9LDA7Pfscan:PS51746PhylomeDB:Q9LDA7PRIDE:Q9LDA7
PRO:PR:Q9LDA7PROSITE:PS51746ProteinModelPortal:Q9LDA7Proteomes:UP000006548
RefSeq:NP_188144.1RefSeq:NP_974318.1SMART:SM00332SMR:Q9LDA7
STRING:3702.AT3G15260.1SUPFAM:SSF81606TAIR:AT3G15260UniGene:At.28162
UniGene:At.64997UniProt:Q9LDA7
Coordinates (TAIR10) chr3:+:5138842..5140242
Molecular Weight (calculated) 31631.70 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.25
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGREILHKM KESVKEKVGL GASASSADSG KGKSKMLKQI THGFHLVKGK AFHEMEDYVV AKFKEVDDNE LGLFAIFDGH LSHEIPDYLC SHLFENILKE
101: PNFWQEPEKA IKKAYYITDT TILDKADDLG KGGSTAVTAI LINCQKLVVA NVGDSRAVIC QNGVAKPLSV DHEPNMEKDE IENRGGFVSN FPGDVPRVDG
201: QLAVARAFGD KSLKMHLSSE PYVTVEIIDD DAEFLILASD GLWKVMSNQE AVDSIKGIKD AKAAAKHLAE EAVARKSSDD ISVVVVKFQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)