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AT5G56140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5176eggNOG:KOG1588EMBL:AB011476EMBL:AY080852
EMBL:BT000873EMBL:CP002688EnsemblPlants:AT5G56140EnsemblPlants:AT5G56140.1
entrez:835713Gene3D:3.30.1370.10GeneID:835713Genevisible:Q9FKT4
GO:GO:0003723GO:GO:0005634Gramene:AT5G56140.1hmmpanther:PTHR11208
HOGENOM:HOG000238548InParanoid:Q9FKT4InterPro:IPR004087InterPro:IPR004088
InterPro:IPR032377KEGG:ath:AT5G56140KO:K14945OMA:VEANTEC
PaxDb:Q9FKT4Pfam:PF16544Pfam:Q9FKT4PhylomeDB:Q9FKT4
PRIDE:Q9FKT4PRO:PR:Q9FKT4ProteinModelPortal:Q9FKT4Proteomes:UP000006548
RefSeq:NP_200425.1SMART:SM00322SMR:Q9FKT4STRING:3702.AT5G56140.1
SUPFAM:SSF54791TAIR:AT5G56140UniGene:At.29404UniProt:Q9FKT4
Coordinates (TAIR10) chr5:+:22725462..22727932
Molecular Weight (calculated) 33986.80 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.38
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMMSSLGGG GGGGGGSGGG IGGGGGGRFM TYSSSLSVPP SAPQSPNYSG GLRSQSSVFV EQEKYLSELL AERHKLTPFL PVLPHAFRLL NQEILRVTTL
101: LENATVLSQS GLDHPSPLAS GGIFQNARAD MNGWASQFPS ERSVPSSPGP NWLNSPGSSS GLIAKRTIRV DIPVDNYPNF NFVGRLLGPR GNSLKRVEAS
201: TDCRVLIRGR GSIKDPIKEE MMRGKPGYEH LNEPLHILVE AELPIEIVDA RLMQAREILD DLLTPMEETH DMYKKQQLRE LALLNGTLRE EGSPMSGSVS
301: PYNSLGMKRA KTREG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)