AT3G13460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Physically interacts with CIPK1. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 2 (ECT2); FUNCTIONS IN: protein binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 4 (TAIR:AT1G55500.2); Has 1777 Blast hits to 1661 proteins in 257 species: Archae - 0; Bacteria - 83; Metazoa - 881; Fungi - 229; Plants - 416; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4385274..4388220 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72479.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.75 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||
| Length | 667 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN 101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI 201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH 301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS 401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG 501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK 601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)