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AT1G09640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1B, gamma chain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G57720.2); Has 8999 Blast hits to 8983 proteins in 1311 species: Archae - 2; Bacteria - 4523; Metazoa - 1774; Fungi - 604; Plants - 732; Viruses - 0; Other Eukaryotes - 1364 (source: NCBI BLink).
Protein Annotations
BioGrid:22732eggNOG:COG0625eggNOG:KOG0867eggNOG:KOG1627
EMBL:AC000132EMBL:AY080820EMBL:AY089154EMBL:CP002684
EnsemblPlants:AT1G09640EnsemblPlants:AT1G09640.1entrez:837491ExpressionAtlas:B9DHI9
ExpressionAtlas:O04487Gene3D:1.20.1050.10Gene3D:3.30.70.1010Gene3D:3.40.30.10
GeneID:837491Genevisible:O04487GO:GO:0003746GO:GO:0005773
GO:GO:0005829GO:GO:0005886GO:GO:0009506hmmpanther:PTHR11260
hmmpanther:PTHR11260:SF194HOGENOM:HOG000201196InParanoid:O04487InterPro:IPR001662
InterPro:IPR004045InterPro:IPR004046InterPro:IPR010987InterPro:IPR012336
iPTMnet:O04487OMA:DGWSLWFPaxDb:O04487Pfam:O04487
Pfam:PF00043Pfam:PF00647Pfam:PF02798Pfscan:PS50040
Pfscan:PS50404Pfscan:PS50405PhylomeDB:O04487PIR:B86230
PRIDE:O04487PRO:PR:O04487PROSITE:PS50040PROSITE:PS50404
PROSITE:PS50405ProteinModelPortal:O04487Proteomes:UP000006548Reactome:R-ATH-156842
RefSeq:NP_563848.1SMART:SM01183SMR:O04487STRING:3702.AT1G09640.1
SUPFAM:0048731SUPFAM:SSF47616SUPFAM:SSF52833SUPFAM:SSF89942
SwissPalm:O04487TAIR:AT1G09640UniGene:At.23720UniGene:At.43279
UniProt:B9DHI9UniProt:O04487
Coordinates (TAIR10) chr1:+:3120162..3122152
Molecular Weight (calculated) 46663.00 Da
IEP (calculated) 5.13
GRAVY (calculated) -0.29
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)