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AT1G57720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:25587034 (2015): cytosol
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Translation elongation factor EF1B, gamma chain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 10185 Blast hits to 9750 proteins in 1401 species: Archae - 0; Bacteria - 5136; Metazoa - 1722; Fungi - 558; Plants - 845; Viruses - 5; Other Eukaryotes - 1919 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1000-MONOMERBioCyc:ARA:GQT-2492-MONOMERBioGrid:27372eggNOG:COG0625
eggNOG:KOG0867eggNOG:KOG1627EMBL:AC079733EMBL:AF370502
EMBL:AF424630EMBL:AF428347EMBL:AY035082EMBL:AY064630
EMBL:AY085256EMBL:AY113043EMBL:BT000973EMBL:CP002684
EnsemblPlants:AT1G57720EnsemblPlants:AT1G57720.1EnsemblPlants:AT1G57720.2entrez:842147
Gene3D:1.20.1050.10Gene3D:3.30.70.1010Gene3D:3.40.30.10GeneID:842147
Genevisible:Q9FVT2GO:GO:0003746GO:GO:0005507GO:GO:0005618
GO:GO:0005773GO:GO:0005829GO:GO:0005886GO:GO:0009506
GO:GO:0010043GO:GO:0016020GO:GO:0046686Gramene:AT1G57720.1
Gramene:AT1G57720.2hmmpanther:PTHR11260hmmpanther:PTHR11260:SF194HOGENOM:HOG000201196
InParanoid:Q9FVT2IntAct:Q9FVT2InterPro:IPR001662InterPro:IPR004045
InterPro:IPR004046InterPro:IPR010987InterPro:IPR012336KEGG:ath:AT1G57720
KO:K03233OMA:YKGNKGAPaxDb:Q9FVT2Pfam:PF00043
Pfam:PF00647Pfam:PF02798Pfam:Q9FVT2Pfscan:PS50040
Pfscan:PS50404Pfscan:PS50405PhylomeDB:Q9FVT2PIR:E96611
PRIDE:Q9FVT2PRO:PR:Q9FVT2PROSITE:PS50040PROSITE:PS50404
PROSITE:PS50405ProteinModelPortal:Q9FVT2Proteomes:UP000006548Reactome:R-ATH-156842
RefSeq:NP_001031202.1RefSeq:NP_176084.1SMART:SM01183SMR:Q9FVT2
STRING:3702.AT1G57720.1SUPFAM:0048731SUPFAM:SSF47616SUPFAM:SSF52833
SUPFAM:SSF89942TAIR:AT1G57720UniGene:At.23720UniGene:At.67042
UniProt:Q9FVT2
Coordinates (TAIR10) chr1:+:21377873..21380114
Molecular Weight (calculated) 46402.70 Da
IEP (calculated) 5.40
GRAVY (calculated) -0.35
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVMHTYKG NKGANKALIA AEYAGVKIEE SADFQMGVTN KSPEFLKMNP IGKVPVLETP EGPIFESNAI ARYVSRKNGD NSLNGSSLIE YAHIEQWIDF
101: SSLEIDANML KWFAPRMGYA PFSAPAEEAA ISALKRGLEA LNTHLASNTF LVGHSVTLAD IVTICNLNLG FATVMTKKFT SAFPHVERYF WTMVNQPEFK
201: KVLGDAKQTE AVPPVPTKKA PQPAKPKEEP KKAAPVAEAP KPAEEEEAPK PKAKNPLDLL PPSPMVLDDW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYSFGKML ICGSEGPFKV KGLWLFRGPE IPKFIMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)