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AT2G18110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1B/ribosomal protein S6 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: eukaryotic translation elongation factor 1 complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (TAIR:AT1G30230.1); Has 1014 Blast hits to 1012 proteins in 273 species: Archae - 0; Bacteria - 6; Metazoa - 527; Fungi - 160; Plants - 164; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
BioGrid:1680eggNOG:COG2092eggNOG:KOG1668EMBL:AC006201
EMBL:AC007212EMBL:AY065159EMBL:AY081568EMBL:AY087429
EMBL:CP002685EnsemblPlants:AT2G18110EnsemblPlants:AT2G18110.1entrez:816323
Gene3D:3.30.70.60GeneID:816323Genevisible:Q9SI20GO:GO:0003746
GO:GO:0005829GO:GO:0005853Gramene:AT2G18110.1HOGENOM:HOG000207273
InParanoid:Q9SI20IntAct:Q9SI20InterPro:IPR001326InterPro:IPR010987
InterPro:IPR014038InterPro:IPR014717iPTMnet:Q9SI20KEGG:ath:AT2G18110
KO:K03232ncoils:CoilOMA:KDFAYASPaxDb:Q9SI20
Pfam:PF00736Pfam:Q9SI20PhylomeDB:Q9SI20PIR:D84560
PRIDE:Q9SI20PRO:PR:Q9SI20PROSITE:PS00824PROSITE:PS00825
ProteinModelPortal:Q9SI20Proteomes:UP000006548Reactome:R-ATH-156842RefSeq:NP_179402.1
scanprosite:PS00824scanprosite:PS00825SMART:SM00888SMR:Q9SI20
STRING:3702.AT2G18110.1SUPFAM:SSF47616SUPFAM:SSF54984TAIR:AT2G18110
UniGene:At.23357UniGene:At.43053UniProt:Q9SI20
Coordinates (TAIR10) chr2:+:7872636..7873713
Molecular Weight (calculated) 25267.70 Da
IEP (calculated) 4.22
GRAVY (calculated) -0.30
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFPNLNSG SGLKKLDEHL LTRSYITGYQ ASKDDITVFT ALSKPPTSEF VNVSRWFNHI DALLRISGVS AEGSGVIVEG SSPITEEAVA TPPAADSKDT
101: AAEEEDDDDV DLFGEETEEE KKAAEERAAS VKASTKKKES GKSSVLMDIK PWDDETDMKK LEEAVRSIQM EGLFWGASKL VPVGYGIKKL HIMCTIVDDL
201: VSIDTMIEEQ LTVEPINEYV QSCDIVAFNK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)