AT2G18110.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Translation elongation factor EF1B/ribosomal protein S6 family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: eukaryotic translation elongation factor 1 complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (TAIR:AT1G30230.1); Has 1014 Blast hits to 1012 proteins in 273 species: Archae - 0; Bacteria - 6; Metazoa - 527; Fungi - 160; Plants - 164; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:7872636..7873713 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 25267.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 231 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAAFPNLNSG SGLKKLDEHL LTRSYITGYQ ASKDDITVFT ALSKPPTSEF VNVSRWFNHI DALLRISGVS AEGSGVIVEG SSPITEEAVA TPPAADSKDT 101: AAEEEDDDDV DLFGEETEEE KKAAEERAAS VKASTKKKES GKSSVLMDIK PWDDETDMKK LEEAVRSIQM EGLFWGASKL VPVGYGIKKL HIMCTIVDDL 201: VSIDTMIEEQ LTVEPINEYV QSCDIVAFNK I |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)