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AT1G64090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26084919 (2015): cytosol cell plate
  • PMID:26084919 (2015): endoplasmic reticulum
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20374526 (2010): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Reticulan like protein B3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Reticulan like protein B3 (RTNLB3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1); Has 1238 Blast hits to 1236 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 713; Fungi - 17; Plants - 487; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioGrid:27934EMBL:AC007764EMBL:AK226984EMBL:AY064065
EMBL:AY117343EMBL:CP002684EnsemblPlants:AT1G64090EnsemblPlants:AT1G64090.1
entrez:842713ExpressionAtlas:Q9SH59GeneID:842713Genevisible:Q9SH59
GO:GO:0005774GO:GO:0071458GO:GO:0071782GO:GO:0071786
hmmpanther:PTHR10994hmmpanther:PTHR10994:SF70HOGENOM:HOG000237479InParanoid:Q9SH59
InterPro:IPR003388iPTMnet:Q9SH59Pfam:PF02453Pfam:Q9SH59
Pfscan:PS50845PhylomeDB:Q9SH59PRIDE:Q9SH59PRO:PR:Q9SH59
PROSITE:PS50845ProteinModelPortal:Q9SH59Proteomes:UP000006548RefSeq:NP_176592.1
SMR:Q9SH59TAIR:AT1G64090tair10-symbols:RTNLB3TMHMM:TMhelix
UniGene:At.27443UniProt:Q9SH59
Coordinates (TAIR10) chr1:+:23789395..23790669
Molecular Weight (calculated) 28698.00 Da
IEP (calculated) 8.89
GRAVY (calculated) 0.04
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)