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AT1G32050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SCAMP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SCAMP family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: secretory carrier 3 (TAIR:AT1G61250.1); Has 679 Blast hits to 677 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 375; Fungi - 14; Plants - 225; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSJNeggNOG:KOG3088EMBL:AC074309EMBL:AK226594
EMBL:AY087388EMBL:BT025793EMBL:CP002684EnsemblPlants:AT1G32050
EnsemblPlants:AT1G32050.1entrez:840097GeneID:840097Genevisible:Q9C6X2
GO:GO:0005739GO:GO:0005794GO:GO:0005886GO:GO:0015031
GO:GO:0016021GO:GO:0030658Gramene:AT1G32050.1hmmpanther:PTHR10687
hmmpanther:PTHR10687:SF15HOGENOM:HOG000005901InParanoid:Q9C6X2InterPro:IPR007273
iPTMnet:Q9C6X2KEGG:ath:AT1G32050KO:K19995ncoils:Coil
OMA:YALIGCPPANTHER:PTHR10687PaxDb:Q9C6X2Pfam:PF04144
Pfam:Q9C6X2PhylomeDB:Q9C6X2PIR:G86444PRIDE:Q9C6X2
PRO:PR:Q9C6X2Proteomes:UP000006548RefSeq:NP_174485.1STRING:3702.AT1G32050.1
TAIR:AT1G32050TMHMM:TMhelixUniGene:At.43052UniProt:Q9C6X2
Coordinates (TAIR10) chr1:+:11528616..11530974
Molecular Weight (calculated) 30061.80 Da
IEP (calculated) 7.91
GRAVY (calculated) 0.23
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRHHDPNPF DEDEEIVNPF SKGGGRVPAA SRPVEYGQSL DATVDIPLDN MNDSSQKQRK LADWEAELRK KEMDIKRREE AIAKFGVQID DKNWPPFFPI
101: IHHDIAKEIP VHAQKLQYLA FASWLGIVLC LVFNVIATMV CWIKGGGVKI FFLATIYALI GCPLSYVLWY RPLYRAMRTD SALKFGWFFF TYLIHIGFCI
201: VAAIAPPIFF HGKSLTGVLA AIDVISDSLL AGIFYFIGFG LFCLESLLSL WVLQKIYLYF RGNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)