suba logo
AT2G39440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0SEeggNOG:ENOG41126TYEMBL:CP002685EnsemblPlants:AT2G39440
EnsemblPlants:AT2G39440.1entrez:818529GeneID:818529Gramene:AT2G39440.1
hmmpanther:PTHR21726hmmpanther:PTHR21726:SF42InterPro:IPR013924iPTMnet:F4IVV8
KEGG:ath:AT2G39440KO:K10745OMA:RGYPLMGPaxDb:F4IVV8
Pfam:PF08615PRIDE:F4IVV8ProteinModelPortal:F4IVV8Proteomes:UP000006548
RefSeq:NP_181476.2SMR:F4IVV8STRING:3702.AT2G39440.1TAIR:AT2G39440
UniGene:At.37172UniProt:F4IVV8
Coordinates (TAIR10) chr2:-:16468220..16469113
Molecular Weight (calculated) 18142.30 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.50
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTIDFRAAA DENSIVDLSS QVHQLPCCIR FDGPVEVSHY FKPKSSDVEI DGVKTEEAHF RGRKLQGATI SLPSGYSGFV LRQASNLNAN GKRKASMPTE
101: DNQCWEVKAK FNNLTYWNHD SLPSKDDTFF RSFHWFSIAE ALHKPVKVED LVAVSHGGKN KI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)