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AT1G22520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF543)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF543); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF543 (InterPro:IPR007512); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF543) (TAIR:AT1G72170.1); Has 107 Blast hits to 107 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4112535eggNOG:KOG4604EMBL:AY087767EMBL:BT025577
EMBL:CP002684EnsemblPlants:AT1G22520EnsemblPlants:AT1G22520.1entrez:838858
ExpressionAtlas:Q8LAJ9GeneID:838858Gramene:AT1G22520.1hmmpanther:PTHR21304
hmmpanther:PTHR21304:SF0InterPro:IPR007512PANTHER:PTHR21304Pfam:PF04418
PhylomeDB:Q8LAJ9Proteomes:UP000006548RefSeq:NP_564173.1STRING:3702.AT1G22520.2
SwissPalm:Q8LAJ9TAIR:AT1G22520UniGene:At.41596UniProt:Q8LAJ9
Coordinates (TAIR10) chr1:-:7953299..7954304
Molecular Weight (calculated) 10357.90 Da
IEP (calculated) 4.63
GRAVY (calculated) 0.02
Length 99 amino acids
Sequence (TAIR10)
(BLAST)
1: METTKSNSSE SDVNAKWDAC LDLTARRFVY SSLGGAFAGL LFFRSPVTRW ASIAFGAGIG IGSAYTDCSR VFDASSSTSA TLLAAPKSTE TSVSQAAEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)