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AT5G55000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein
Curator
Summary (TAIR10)
FH protein interacting protein FIP2
Computational
Description (TAIR10)
FIP2; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 27525 Blast hits to 9536 proteins in 1229 species: Archae - 302; Bacteria - 20004; Metazoa - 1613; Fungi - 16; Plants - 337; Viruses - 108; Other Eukaryotes - 5145 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1357eggNOG:KOG1665EMBL:CP002688EnsemblPlants:AT5G55000
EnsemblPlants:AT5G55000.1entrez:835591ExpressionAtlas:F4K1X9GeneID:835591
GO:GO:0051260Gramene:AT5G55000.1hmmpanther:PTHR14958hmmpanther:PTHR14958:SF15
InterPro:IPR000210InterPro:IPR001646InterPro:IPR003131InterPro:IPR011333
PaxDb:F4K1X9Pfam:PF00805Pfam:PF02214PhylomeDB:F4K1X9
PRIDE:F4K1X9ProteinModelPortal:F4K1X9Proteomes:UP000006548RefSeq:NP_851193.1
SMART:SM00225SMR:F4K1X9STRING:3702.AT5G55000.2SUPFAM:SSF141571
SUPFAM:SSF54695TAIR:AT5G55000tair10-symbols:FIP2UniGene:At.11758
UniProt:F4K1X9
Coordinates (TAIR10) chr5:+:22318644..22321435
Molecular Weight (calculated) 32103.50 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.21
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: METSSNLSSM VRLNIGGKKF CTTIDTLTIR EPDSMLAAMF SGRHAMCQES KKGYVFIDRD GKHFRHILNW LRDGVIPSLS DPDCSELLRE ADYYQLLGLK
101: DGIKDSRKEV GEVEAELTRI DIIKCIQTER VRFRGVNLSG IDLSKLDLSL VDFSYACLRN VFFSRTNLQC AKFRNADAEG SIFHNAILRE CEFTSANLRG
201: ALLAGTNLQS ANLQDACLVG CSFCGADLRT AHLQNADLTN ANLEGANLEG ANLKGAKLSN ANFKGANLQR AYLRHVNLRE AVSPKPILGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)