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AT2G45330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA 2'-phosphotransferase, Tpt1 / KptA family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 1059 Blast hits to 1053 proteins in 477 species: Archae - 87; Bacteria - 561; Metazoa - 92; Fungi - 143; Plants - 80; Viruses - 6; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1859eggNOG:KOG2278EMBL:CP002685EnsemblPlants:AT2G45330
EnsemblPlants:AT2G45330.1entrez:819141ExpressionAtlas:F4IW51GeneID:819141
GO:GO:0006388GO:GO:0016772Gramene:AT2G45330.1hmmpanther:PTHR12684
hmmpanther:PTHR12684:SF2InterPro:IPR002745iPTMnet:F4IW51OMA:GGYERDN
PaxDb:F4IW51Pfam:PF01885PRIDE:F4IW51ProteinModelPortal:F4IW51
Proteomes:UP000006548RefSeq:NP_182058.2SMR:F4IW51STRING:3702.AT2G45330.1
SUPFAM:SSF56399TAIR:AT2G45330tair10-symbols:emb1067UniGene:At.43776
UniProt:F4IW51
Coordinates (TAIR10) chr2:+:18686340..18687874
Molecular Weight (calculated) 32302.90 Da
IEP (calculated) 10.16
GRAVY (calculated) -0.42
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLRLCRHRL PLPLTLSSSV FFSKSSPVSS AFMDASNPNS SRKSNVSSFA QSSRSGGRGG GYERDNDRRR PQGRGDGGGG KDRIDALGRL LTRILRHMAT
101: ELRLNMRGDG FVKVEDLLNL NLKTSANIQL KSHTIDEIRE AVRRDNKQRF SLIDENGELL IRANQGHSIT TVESEKLLKP ILSPEEAPVC VHGTYRKNLE
201: SILASGLKRM NRMHVHFSCG LPTDGEVISG MRRNVNVIIF LDIKKALEDG IAFYISDNKV ILTEGIDGVL PVDYFQKIES WPDRQSIPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)