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AT5G19050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1749 (InterPro:IPR013744); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZXE1eggNOG:KOG4840EMBL:AJ319539EMBL:AY074297
EMBL:AY142604EMBL:CP002688EnsemblPlants:AT5G19050EnsemblPlants:AT5G19050.1
entrez:832024ESTHER:arath-AT5G19050Gene3D:3.40.50.1820GeneID:832024
Gramene:AT5G19050.1hmmpanther:PTHR31591hmmpanther:PTHR31591:SF1HOGENOM:HOG000178252
InterPro:IPR013744InterPro:IPR029058KEGG:ath:AT5G19050OMA:LCTVPYV
Pfam:PF08538PhylomeDB:Q94IU8Proteomes:UP000006548RefSeq:NP_197406.1
SMR:Q94IU8SUPFAM:SSF53474TAIR:AT5G19050UniGene:At.10435
UniProt:Q94IU8
Coordinates (TAIR10) chr5:+:6369307..6371726
Molecular Weight (calculated) 38427.30 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.27
Length 361 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSLPSSSA AAAAASTSGS SSSPAAASSS STTTSWFSGI VRGRGDKSGT AKLSKSSSMA GGGSGSGDYG GPIKGKNQFR GVLFKYGPKS IQVAFKTGEY
101: KQQVIFIGGL TDGLLATDYL EPLAIALDKE KWSLVQLLMS SSYSGFGTSS LKQDAQEIDQ LINHLINKEN SEGVVLLGHS TGCQDIVYYM GTNAACSRAV
201: RAAILQAPVS DREYKATLPE TPAMIDLAAN MIKEGRGEEL MPREADPCAP ISAYRYHSLC AYMGDDDMFS SDLSDDQLKT RLGHMANTPC QVIFSMGDEY
301: VPDYVDKKAL VNRLSKAMGG AEKVEIEHGN HSLSNRVHEA VQAIIGFVKR EGPSGWDDPW S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)