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AT3G54840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.902
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18055610 (2007): Golgi trans-Golgi network
  • PMID:17337534 (2007): Golgi trans-Golgi network
  • PMID:17259264 (2007): Golgi trans-Golgi network
  • PMID:16621602 (2006): endoplasmic reticulum
  • PMID:16461582 (2006): Golgi trans-Golgi network
  • PMID:15743878 (2005): endoplasmic reticulum
  • PMID:15659621 (2005): endoplasmic reticulum
  • PMID:15546360 (2004): endoplasmic reticulum
  • PMID:12932321 (2003): endoplasmic reticulum
  • PMID:11532937 (2001): endoplasmic reticulum
  • PMID:11532937 (2001): Golgi trans-Golgi network
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ras-related small GTP-binding family protein
Curator
Summary (TAIR10)
Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.
Computational
Description (TAIR10)
ARA6; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: early endosome to late endosome transport, N-terminal protein myristoylation; LOCATED IN: endosome, external side of endosome membrane, early endosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT4G19640.1); Has 26142 Blast hits to 26098 proteins in 715 species: Archae - 24; Bacteria - 131; Metazoa - 13692; Fungi - 3685; Plants - 2883; Viruses - 20; Other Eukaryotes - 5707 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G54840-MONOMERBioGrid:9965eggNOG:ENOG410YCCPeggNOG:KOG0092
EMBL:AB007766EMBL:AK316975EMBL:AL049655EMBL:BT002860
EMBL:BT004392EMBL:CP002686EnsemblPlants:AT3G54840EnsemblPlants:AT3G54840.1
entrez:824649Gene3D:3.40.50.300GeneID:824649Genevisible:Q9CB01
GO:GO:0003924GO:GO:0005525GO:GO:0005768GO:GO:0005769
GO:GO:0005783GO:GO:0005886GO:GO:0006897GO:GO:0007264
GO:GO:0010009GO:GO:0015031GO:GO:0031901GO:GO:0045022
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF485HOGENOM:HOG000233968InParanoid:Q9CB01
IntAct:Q9CB01InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT3G54840OMA:CAEKNGMPaxDb:Q9CB01Pfam:PF00071
Pfam:Q9CB01Pfscan:PS51419PhylomeDB:Q9CB01PIR:T06736
PRIDE:Q9CB01PRO:PR:Q9CB01PROSITE:PS51419ProteinModelPortal:Q9CB01
Proteomes:UP000006548RefSeq:NP_001078287.1RefSeq:NP_567008.1SMR:Q9CB01
STRING:3702.AT3G54840.1SUPFAM:SSF52540SwissPalm:Q9CB01TAIR:AT3G54840
tair10-symbols:ARA-6tair10-symbols:ARA6tair10-symbols:ATRAB5Ctair10-symbols:ATRABF1
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.3115UniProt:Q9CB01
Coordinates (TAIR10) chr3:+:20318597..20320782
Molecular Weight (calculated) 21890.00 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.22
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA
101: PLYYRGAGVA VIVYDITSPE SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT ADNINQLFEE IGKRLPRPAP
201: SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)