AT1G16890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-conjugating enzyme 36 | ||||||||||||
| Curator Summary (TAIR10) |
UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. | ||||||||||||
| Computational Description (TAIR10) |
ubiquitin-conjugating enzyme 36 (UBC36); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 35 (TAIR:AT1G78870.2); Has 10019 Blast hits to 10015 proteins in 393 species: Archae - 0; Bacteria - 4; Metazoa - 4493; Fungi - 2117; Plants - 1786; Viruses - 23; Other Eukaryotes - 1596 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5776550..5777903 | ||||||||||||
| Molecular Weight (calculated) | 13631.60 Da | ||||||||||||
| IEP (calculated) | 7.51 | ||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||
| Length | 120 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRYFNVMILG PTQSPYEGGV FKLELFLPEE YPMAAPKVRF LTKIYHPNID KLGRICLDIL KDKWSPALQI RTVLLSIQAL LSAPNPDDPL SENIAKHWKS 101: NEAEAVETAK EWTRLYASGA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)