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AT1G28120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G28120-MONOMERBioGrid:24940EC:3.4.19.12eggNOG:ENOG410ZMN7
eggNOG:KOG3991EMBL:AC069471EMBL:AY084389EMBL:AY136373
EMBL:BT000164EMBL:CP002684EnsemblPlants:AT1G28120EnsemblPlants:AT1G28120.1
entrez:839705ExpressionAtlas:Q8LG98GeneID:839705Genevisible:Q8LG98
GO:GO:0016579GO:GO:0036459Gramene:AT1G28120.1hmmpanther:PTHR12931
HOGENOM:HOG000019496InParanoid:Q8LG98IntAct:Q8LG98InterPro:IPR003323
InterPro:IPR016615InterPro:IPR019400KEGG:ath:AT1G28120KO:K09602
MEROPS:C65.001MINT:MINT-8063619OMA:EDFHETFPaxDb:Q8LG98
Pfam:PF10275Pfam:Q8LG98Pfscan:PS50802PhylomeDB:Q8LG98
PIR:A86407PIRSF:PIRSF013503PRIDE:Q8LG98PRO:PR:Q8LG98
PROSITE:PS50802ProteinModelPortal:Q8LG98Proteomes:UP000006548RefSeq:NP_564299.1
SMR:Q8LG98STRING:3702.AT1G28120.1SUPFAM:SSF54001TAIR:AT1G28120
UniGene:At.43774UniProt:K9M9G0UniProt:Q8LG98
Coordinates (TAIR10) chr1:-:9813219..9815143
Molecular Weight (calculated) 34436.20 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.31
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MQNQIDMVKD EAEVAASISA IKGEEWGNCS SVEDQPSFQE EEAAKVPYVG DKEPLSSLAA EYQSGSPILL EKIKILDSQY IGIRRTRGDG NCFFRSFMFS
101: YLEHILESQD RAEVDRIKVN VEKCRKTLQN LGYTDFTFED FFALFLEQLD DILQGTEESI SYDELVNRSR DQSVSDYIVM FFRFVTAGDI RTRADFFEPF
201: ITGLSNATVD QFCKSSVEPM GEESDHIHIT ALSDALGVAI RVVYLDRSSC DSGGVTVNHH DFVPVGITNE KDEEASAPFI TLLYRPGHYD ILYPKPSCKV
301: SDNVGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)