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AT2G41630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transcription factor IIB
Curator
Summary (TAIR10)
Encodes the transcription factor TFIIB.
Computational
Description (TAIR10)
transcription factor IIB (TFIIB); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Cyclin-like (InterPro:IPR011028), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Zinc finger, TFIIB-type (InterPro:IPR013137), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin-like family protein (TAIR:AT3G10330.1); Has 1967 Blast hits to 1965 proteins in 361 species: Archae - 538; Bacteria - 1; Metazoa - 305; Fungi - 294; Plants - 195; Viruses - 14; Other Eukaryotes - 620 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1405eggNOG:KOG1597EMBL:AY463600EnsemblPlants:AT2G41630
EnsemblPlants:AT2G41630.1entrez:818761ExpressionAtlas:Q53YU0Gene3D:1.10.472.10
GeneID:818761GO:GO:0006352GO:GO:0006355GO:GO:0008270
Gramene:AT2G41630.1hmmpanther:PTHR11618hmmpanther:PTHR11618:SF27InterPro:IPR000812
InterPro:IPR013137InterPro:IPR013150InterPro:IPR013763InterPro:IPR023486
KEGG:ath:AT2G41630KO:K03124OMA:KIAPSWYPANTHER:PTHR11618
PaxDb:Q53YU0Pfam:P48512Pfam:PF00382Pfam:PF08271
Pfscan:PS51134PhylomeDB:Q53YU0PRIDE:Q53YU0PRINTS:PR00685
PROSITE:PS00782PROSITE:PS51134ProteinModelPortal:Q53YU0RefSeq:NP_181694.1
scanprosite:PS00782SMART:SM00385SMR:Q53YU0STRING:3702.AT2G41630.1
SUPFAM:SSF47954SUPFAM:SSF57783TAIR:AT2G41630tair10-symbols:TFIIB
UniGene:At.10174UniProt:P48512UniProt:Q53YU0
Coordinates (TAIR10) chr2:-:17355555..17357400
Molecular Weight (calculated) 34273.30 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.47
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDAYCTDCK KETELVVDHS AGDTLCSECG LVLESHSIDE TSEWRTFANE SSNSDPNRVG GPTNPLLADS ALTTVIAKPN GSSGDFLSSS LGRWQNRNSN
101: SDRGLIQAFK TIATMSERLG LVATIKDRAN ELYKRLEDQK SSRGRNQDAL YAACLYIACR QEDKPRTIKE ICVIANGATK KEIGRAKDYI VKTLGLEPGQ
201: SVDLGTIHAG DFMRRFCSNL AMSNHAVKAA QEAVQKSEEF DIRRSPISIA AVVIYIITQL SDDKKTLKDI SHATGVAEGT IRNSYKDLYP HLSKIAPSWY
301: AKEEDLKNLS SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)