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AT3G54130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Josephin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Josephin family protein; CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: JOSEPHIN-like protein (TAIR:AT2G29640.1); Has 590 Blast hits to 584 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 441; Fungi - 14; Plants - 76; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G54130-MONOMERBioGrid:9897EC:3.4.19.12eggNOG:ENOG4111G4B
eggNOG:KOG2935EMBL:AL132957EMBL:BT010762EMBL:BT010992
EMBL:CP002686EnsemblPlants:AT3G54130EnsemblPlants:AT3G54130.1entrez:824580
GeneID:824580Genevisible:Q9M391GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0008242GO:GO:0036459Gramene:AT3G54130.1
hmmpanther:PTHR14159HOGENOM:HOG000006034InParanoid:Q9M391InterPro:IPR006155
iPTMnet:Q9M391KEGG:ath:AT3G54130KO:K11863MEROPS:C86.A01
MINT:MINT-8065588OMA:RQVMLQGPaxDb:Q9M391Pfam:PF02099
Pfam:Q9M391Pfscan:PS50957PhylomeDB:Q9M391PIR:T47572
PRIDE:Q9M391PRINTS:PR01233PRO:PR:Q9M391PROSITE:PS50957
ProteinModelPortal:Q9M391Proteomes:UP000006548RefSeq:NP_190981.1SMART:SM01246
SMR:Q9M391STRING:3702.AT3G54130.1TAIR:AT3G54130UniGene:At.926
UniProt:Q9M391
Coordinates (TAIR10) chr3:-:20042895..20044429
Molecular Weight (calculated) 30693.60 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.35
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MERTSNGGML YHEVQESNLC AVHCVNTVLQ GPFFSEFDLA AVAADLDGKE RQVMLEGAAV GGFAPGDFLA EESHNVSLGG DFSIQVLQKA LEVWDLQVIP
101: LNCPDAEPAQ IDPELESAFI CHLHDHWFCI RKVNGEWYNF DSLLAAPQHL SKFYLSAFLD SLKGAGWSIF IVKGNFPQEC PMSSSSEASN SFGQWLSPED
201: AERIRKNTSS GSSARNKRSN DNVNQQRRNQ ALSREEVQAF SEMEDDDLKA AIAASLLDAS AAEANLGAVG TSEKETEKQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)