AT2G34630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : geranyl diphosphate synthase 1 | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal. | ||||||||||||||||
| Computational Description (TAIR10) |
geranyl diphosphate synthase 1 (GPS1); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 15732 Blast hits to 15728 proteins in 2900 species: Archae - 335; Bacteria - 9322; Metazoa - 401; Fungi - 471; Plants - 404; Viruses - 0; Other Eukaryotes - 4799 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14579726..14581632 | ||||||||||||||||
| Molecular Weight (calculated) | 35048.40 Da | ||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||
| Length | 321 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLAEVPKLA SAAEYFFKRG VQGKQFRSTI LLLMATALNV RVPEALIGES TDIVTSELRV RQRGIAEITE MIHVASLLHD DVLDDADTRR GVGSLNVVMG 101: NKMSVLAGDF LLSRACGALA ALKNTEVVAL LATAVEHLVT GETMEITSST EQRYSMDYYM QKTYYKTASL ISNSCKAVAV LTGQTAEVAV LAFEYGRNLG 201: LAFQLIDDIL DFTGTSASLG KGSLSDIRHG VITAPILFAM EEFPQLREVV DQVEKDPRNV DIALEYLGKS KGIQRARELA MEHANLAAAA IGSLPETDNE 301: DVKRSRRALI DLTHRVITRN K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)