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AT4G17530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog 1C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog 1C (RAB1C); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1A (TAIR:AT5G47200.1); Has 29496 Blast hits to 29428 proteins in 784 species: Archae - 23; Bacteria - 169; Metazoa - 15486; Fungi - 4134; Plants - 3462; Viruses - 20; Other Eukaryotes - 6202 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQN5eggNOG:KOG0084EMBL:AF127134EMBL:AK227290
EMBL:AL161546EMBL:AY052204EMBL:AY060495EMBL:CP002687
EMBL:Z97343EnsemblPlants:AT4G17530EnsemblPlants:AT4G17530.1entrez:827468
Gene3D:3.40.50.300GeneID:827468Genevisible:Q9SEH3GO:GO:0000139
GO:GO:0005525GO:GO:0005773GO:GO:0005789GO:GO:0005794
GO:GO:0005829GO:GO:0005886GO:GO:0006888GO:GO:0007264
GO:GO:0009506GO:GO:0009555GO:GO:0009860GO:GO:0015031
GO:GO:0016020Gramene:AT4G17530.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF520
HOGENOM:HOG000233968InParanoid:Q9SEH3IntAct:Q9SEH3InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT4G17530KO:K07874
OMA:SIKNRMAPaxDb:Q9SEH3Pfam:PF00071Pfam:Q9SEH3
Pfscan:PS51419PhylomeDB:Q9SEH3PIR:H71444PRIDE:Q9SEH3
PRO:PR:Q9SEH3PROSITE:PS51419ProteinModelPortal:Q9SEH3Proteomes:UP000006548
Reactome:R-ATH-204005Reactome:R-ATH-6807878RefSeq:NP_193486.1SMR:Q9SEH3
STRING:3702.AT4G17530.1SUPFAM:SSF52540TAIR:AT4G17530tair10-symbols:ATRAB1C
tair10-symbols:ATRABD2Ctair10-symbols:RAB1CTIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.22483UniGene:At.24811UniGene:At.48871UniProt:Q9SEH3
Coordinates (TAIR10) chr4:-:9773721..9775424
Molecular Weight (calculated) 22319.40 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.27
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)