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AT5G47200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:32219438 (2020): cytosol
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPase homolog 1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog 1A (RAB1A); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 1C (TAIR:AT4G17530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20014eggNOG:ENOG410XQN5eggNOG:KOG0084EMBL:AB018117
EMBL:AF324990EMBL:AK227103EMBL:AY080753EMBL:AY085384
EMBL:AY114013EMBL:BT023739EMBL:BT025777EMBL:CP002688
EnsemblPlants:AT5G47200EnsemblPlants:AT5G47200.1entrez:834766Gene3D:3.40.50.300
GeneID:834766Genevisible:Q9FPJ4GO:GO:0000139GO:GO:0005525
GO:GO:0005789GO:GO:0005794GO:GO:0005886GO:GO:0006888
GO:GO:0007264GO:GO:0009860GO:GO:0015031Gramene:AT5G47200.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF520HOGENOM:HOG000233968InParanoid:Q9FPJ4
IntAct:Q9FPJ4InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT5G47200KO:K07874OMA:ACVDINQPaxDb:Q9FPJ4
Pfam:PF00071Pfam:Q9FPJ4Pfscan:PS51419PhylomeDB:Q9FPJ4
PRIDE:Q9FPJ4PRO:PR:Q9FPJ4PROSITE:PS51419ProteinModelPortal:Q9FPJ4
Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-6807878RefSeq:NP_568678.1
SMR:Q9FPJ4STRING:3702.AT5G47200.1SUPFAM:SSF52540TAIR:AT5G47200
tair10-symbols:ATRAB1Atair10-symbols:ATRABD2Btair10-symbols:RAB1ATIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.16977UniGene:At.24811UniGene:At.25480
UniProt:Q9FPJ4
Coordinates (TAIR10) chr5:+:19167029..19168718
Molecular Weight (calculated) 22314.40 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.29
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG AKPPTVQIRG QPVNQQSGCC
201: SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)