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AT3G22950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23543785 (2013): endoplasmic reticulum endoplasmic reticulum membrane
  • PMID:23543785 (2013): Golgi Golgi apparatus
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor C1
Curator
Summary (TAIR10)
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins.
Computational
Description (TAIR10)
ADP-ribosylation factor C1 (ARFC1); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor 1 (TAIR:AT1G23490.1); Has 17774 Blast hits to 17763 proteins in 550 species: Archae - 23; Bacteria - 45; Metazoa - 8202; Fungi - 2537; Plants - 2915; Viruses - 3; Other Eukaryotes - 4049 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0070EMBL:AP001300EMBL:AY063958
EMBL:AY086337EMBL:AY096401EMBL:CP002686EnsemblPlants:AT3G22950
EnsemblPlants:AT3G22950.1EnsemblPlants:AT3G22950.2entrez:821868Gene3D:3.40.50.300
GeneID:821868GO:GO:0005525GO:GO:0005622GO:GO:0005886
GO:GO:0007264Gramene:AT3G22950.1Gramene:AT3G22950.2hmmpanther:PTHR11711
hmmpanther:PTHR11711:SF31HOGENOM:HOG000163691InterPro:IPR005225InterPro:IPR006689
InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT3G22950KO:K07950
OMA:EWMTSRAPfam:PF00025Pfscan:PS51417PhylomeDB:Q9LIK1
PRINTS:PR00328PROSITE:PS51417Proteomes:UP000006548RefSeq:NP_001189951.1
RefSeq:NP_188935.1SMR:Q9LIK1STRING:3702.AT3G22950.1SUPFAM:SSF52540
TAIR:AT3G22950tair10-symbols:ARFC1tair10-symbols:ATARFC1TIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.27127UniGene:At.71143UniProt:Q9LIK1
Coordinates (TAIR10) chr3:-:8136364..8137513
Molecular Weight (calculated) 20549.70 Da
IEP (calculated) 6.89
GRAVY (calculated) -0.11
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAFMSRFWF MMFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTHPTVG SNVEELVYKN IRFEVWDLGG QDRLRTSWAT YYRGTHAVIV VIDSTDRARI
101: SFMKDELARL LGHEDLQNSV ILVFANKQDL KDAMTPAEIT DALNLHSIKN HDWHIQASCA VTGEGLYDGL GWIAQKVTGK ATS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)