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AT3G22845.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:19334764 (2009): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT3G07680.1); Has 1821 Blast hits to 1821 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 918; Fungi - 476; Plants - 264; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
BioGrid:7188eggNOG:ENOG410XQCKeggNOG:KOG1692EMBL:AB022223
EMBL:AP001300EMBL:AY070742EMBL:AY093742EMBL:CP002686
EnsemblPlants:AT3G22845EnsemblPlants:AT3G22845.1entrez:821856GeneID:821856
Genevisible:Q9LIL4GO:GO:0005773GO:GO:0005783GO:GO:0005794
GO:GO:0015031GO:GO:0016021GO:GO:0016192GO:GO:0032580
Gramene:AT3G22845.1hmmpanther:PTHR22811hmmpanther:PTHR22811:SF31HOGENOM:HOG000240408
InParanoid:Q9LIL4InterPro:IPR009038InterPro:IPR015720KEGG:ath:AT3G22845
OMA:NEVECVYPANTHER:PTHR22811PaxDb:Q9LIL4Pfam:PF01105
Pfam:Q9LIL4Pfscan:PS50866PhylomeDB:Q9LIL4PRIDE:Q9LIL4
PRO:PR:Q9LIL4PROSITE:PS50866Proteomes:UP000006548RefSeq:NP_188924.3
SMART:SM01190STRING:3702.AT3G22845.1SUPFAM:0041713SUPFAM:SSF101576
SwissPalm:Q9LIL4TAIR:AT3G22845TMHMM:TMhelixUniGene:At.28337
UniProt:Q9LIL4
Coordinates (TAIR10) chr3:+:8087373..8088550
Molecular Weight (calculated) 24282.90 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.20
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MERRQAKIHV FVLIGLILLN SINQISSLSV TVNDEECVQE YVLYEGDTVS GNFVVVDHDI FWGSDHPGLD FTVTSPAGNI VQTLKGTSGD KFEFKAPKSG
101: MYKFCFHNPY STPETVSFYI HVGHIPNEHD LAKDEHLDPV NVKIAELREA LESVVAEQKY LKARDTRHRH TNESTRKRVI FYTVGEYIFL AAASGLQVLY
201: IRKLFSKSVA YNRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)