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AT1G21900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1); Has 1629 Blast hits to 1627 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 476; Plants - 235; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
BioGrid:24031eggNOG:ENOG410XTBQeggNOG:KOG1691EMBL:AC013482
EMBL:AY092996EMBL:AY114612EMBL:CP002684EnsemblPlants:AT1G21900
EnsemblPlants:AT1G21900.1entrez:838792GeneID:838792Genevisible:Q8RWM6
GO:GO:0005783GO:GO:0005789GO:GO:0005801GO:GO:0015031
GO:GO:0016021GO:GO:0016192GO:GO:0030134Gramene:AT1G21900.1
hmmpanther:PTHR22811hmmpanther:PTHR22811:SF68HOGENOM:HOG000160227InParanoid:Q8RWM6
InterPro:IPR009038InterPro:IPR015720KEGG:ath:AT1G21900OMA:HTLYSKE
PANTHER:PTHR22811PaxDb:Q8RWM6Pfam:PF01105Pfam:Q8RWM6
Pfscan:PS50866PhylomeDB:Q8RWM6PIR:C86352PRIDE:Q8RWM6
PRO:PR:Q8RWM6PROSITE:PS50866Proteomes:UP000006548Reactome:R-ATH-6807878
RefSeq:NP_173608.1SMART:SM01190STRING:3702.AT1G21900.1TAIR:AT1G21900
TMHMM:TMhelixUniGene:At.41637UniProt:Q8RWM6
Coordinates (TAIR10) chr1:-:7691165..7692327
Molecular Weight (calculated) 24347.20 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.03
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAINRIAHGS LFLTVVLFFL TVNYGEAIWL TIPTTGGTKC VSEEIQSNVV VLADYYVVDE HNPENTPAVS SKVTSPYGNN LHHQENVTHG QFAFTTQEAG
101: NYLACFWIDS SHHLANPITL GVDWKMGIAA KDWDSVAKKE KIEGVELQLR RLEGLVLSIR ENLNYIKDRE AEMREVSETT NSRVAWFSIM SLGVCVVVVG
201: SQILYLKRYF HKKKLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)