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AT1G43890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GTPASE HOMOLOG B18
Curator
Summary (TAIR10)
ras-related small GTPase
Computational
Description (TAIR10)
RAB GTPASE HOMOLOG B18 (RAB18); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 29517 Blast hits to 29477 proteins in 757 species: Archae - 13; Bacteria - 132; Metazoa - 15379; Fungi - 4258; Plants - 3535; Viruses - 20; Other Eukaryotes - 6180 (source: NCBI BLink).
Protein Annotations
BioGrid:26212eggNOG:ENOG410XPD0eggNOG:KOG0080EMBL:AC006423
EMBL:AC022314EMBL:AF370263EMBL:AK227664EMBL:AY063080
EMBL:AY086878EMBL:CP002684EMBL:U75603EnsemblPlants:AT1G43890
EnsemblPlants:AT1G43890.1EnsemblPlants:AT1G43890.2EnsemblPlants:AT1G43890.3entrez:840987
Gene3D:3.40.50.300GeneID:840987Genevisible:O23657GO:GO:0005525
GO:GO:0005622GO:GO:0005886GO:GO:0007264GO:GO:0015031
Gramene:AT1G43890.1Gramene:AT1G43890.2Gramene:AT1G43890.3hmmpanther:PTHR24073
hmmpanther:PTHR24073:SF598HOGENOM:HOG000233968InParanoid:O23657IntAct:O23657
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G43890
KO:K07910OMA:SENHGRAPaxDb:O23657Pfam:O23657
Pfam:PF00071Pfscan:PS51419PhylomeDB:O23657PIR:A96503
PRIDE:O23657PRO:PR:O23657PROSITE:PS51419ProteinModelPortal:O23657
Proteomes:UP000006548RefSeq:NP_001077675.1RefSeq:NP_001117435.1RefSeq:NP_175056.1
SMR:O23657STRING:3702.AT1G43890.1SUPFAM:SSF52540TAIR:AT1G43890
tair10-symbols:ATRAB-C1tair10-symbols:ATRAB18tair10-symbols:ATRABC1tair10-symbols:RAB18
tair10-symbols:RAB18-1tair10-symbols:RABC1TIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.24663UniProt:O23657
Coordinates (TAIR10) chr1:+:16646934..16648395
Molecular Weight (calculated) 23531.90 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.28
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSGQPEF DYLFKVLLIG DSGVGKSSLL LSFTSNTFDD LSPTIGVDFK VKYLTIGEKK LKLAIWDTAG QERFRTLTSS YYRGAQGIIM VYDVTRRDTF
101: TNLSDIWAKE IDLYSTNQDC IKMLVGNKVD KESERAVSKK EGIDFAREYG CLFLECSAKT RVNVEQCFEE LVLKILETPS LTAEGSSGGK KNIFKQNPAQ
201: TTSTSSSYCC SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)