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AT4G24990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22215637 (2012): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin family protein
Curator
Summary (TAIR10)
geranylgeranylated protein ATGP4
Computational
Description (TAIR10)
ATGP4; FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: membrane-anchored ubiquitin-fold protein 4 precursor (TAIR:AT3G26980.1); Has 159 Blast hits to 159 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13890DNASU:828602eggNOG:ENOG410IZI5eggNOG:ENOG4111561
EMBL:AK227315EMBL:AL035523EMBL:AL161562EMBL:BT003091
EMBL:CP002687EMBL:U64921EnsemblPlants:AT4G24990EnsemblPlants:AT4G24990.1
entrez:828602GeneID:828602Genevisible:Q9SW27GO:GO:0005886
Gramene:AT4G24990.1hmmpanther:PTHR13169hmmpanther:PTHR13169:SF3HOGENOM:HOG000293133
InParanoid:Q9SW27IntAct:Q9SW27InterPro:IPR000626InterPro:IPR017000
InterPro:IPR029071KEGG:ath:AT4G24990OMA:IVMHVVVPaxDb:Q9SW27
PDB:4X57PDBsum:4X57Pfam:PF13881Pfam:Q9SW27
Pfscan:PS50053PhylomeDB:Q9SW27PIR:T05520PIRSF:PIRSF032572
PRIDE:Q9SW27PRO:PR:Q9SW27PROSITE:PS50053ProteinModelPortal:Q9SW27
Proteomes:UP000006548RefSeq:NP_194229.1SMR:Q9SW27STRING:3702.AT4G24990.1
SUPFAM:SSF54236TAIR:AT4G24990tair10-symbols:ATGP4UniGene:At.2645
UniProt:Q9SW27
Coordinates (TAIR10) chr4:-:12849973..12851249
Molecular Weight (calculated) 12836.70 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.10
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MPEEESIDIK FRLYDGSDIG PFRYSAASTV DFLKQRVVSD WPKGKTVVPK GINEVKLISS GKILENNKTV GQCKTPFGDI AGGVIVMHVV VQPSLAKSKT
101: EKKVDKAPKA VICTCTIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)