AT2G45980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18917680..18918569 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28845.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||
| Length | 256 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANNEEHPPR GNEWEVVSLT SSAYAAAPGP YNVESRDVRK YDAYYGAETS RDLYMSEHFV FPPSEHENLP IDESLFVAEQ RKDGRDLMLE GQGLSDQFHY 101: EAGNNQQSIY GESALGSSRH MESFGSESAV YEHGLVDAEG NLDLHSDGEG EKDVKKSTHN LPCEAWWKRR AISMYSRTRE ANAIWSLFFA AAVTGLVVLG 201: QRWQQERWQV LQLKWQSSIS SEKLGRVLEP LSRLKDVIVR SNPQASLVRS GSSSEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)