AT3G57340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G05750.1); Has 24356 Blast hits to 24336 proteins in 3323 species: Archae - 190; Bacteria - 9449; Metazoa - 4326; Fungi - 2357; Plants - 2505; Viruses - 22; Other Eukaryotes - 5507 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:21219175..21220278 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41322.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDGNKDDALK CLKICKSAME AGDRPRALKF LAKARRLDPN LPIDDLVSEL NNNKSDEPGS AKSPGSAAAK DSSNSSDRPS LRQRGSSTTS SSSSMSYTEE 101: QISIVRKIKS KKDYYEILGL ESNCSVDDVR KAYRKLSLKV HPDKNQAPGS EEAFKSVSKA FQCLSNDEAR KKYDVSGSDE PIYQPRRSAR SNGFNGGYYY 201: EDEFDPNEIF RSFFGGGGFG GGGMPPATAQ FRSFNFGATR QRTANNNQAP DAGFNARILL QLLPVVFILL LNFMPSSQPV YQLSATYPYQ YKFTTQKGVN 301: YFVKSSKFEQ DYPRDSNDRH TLEEQVERDY VSILSQNCRY EMQRKQWGFV RETPHCDMMR RFDTAAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)