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AT1G51740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16223486 (2005): endoplasmic reticulum
  • PMID:15342965 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : syntaxin of plants 81
Curator
Summary (TAIR10)
member of SYP8 Gene Family
Computational
Description (TAIR10)
syntaxin of plants 81 (SYP81); INVOLVED IN: vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), SNARE-complex protein Syntaxin-18 N-terminal (InterPro:IPR019529); Has 429 Blast hits to 426 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 82; Plants - 110; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSGTeggNOG:KOG3894EMBL:AC025294EMBL:AY086569
EMBL:BT002917EMBL:BT004352EMBL:CP002684EnsemblPlants:AT1G51740
EnsemblPlants:AT1G51740.1entrez:841599GeneID:841599Genevisible:P59277
GO:GO:0015031GO:GO:0016021GO:GO:0016192Gramene:AT1G51740.1
hmmpanther:PTHR15959hmmpanther:PTHR15959:SF0HOGENOM:HOG000005979IntAct:P59277
InterPro:IPR010989InterPro:IPR019529iPTMnet:P59277KEGG:ath:AT1G51740
KO:K08492ncoils:CoilOMA:KGWLGIRPaxDb:P59277
Pfam:P59277Pfam:PF10496PhylomeDB:P59277PRIDE:P59277
PRO:PR:P59277ProteinModelPortal:P59277Proteomes:UP000006548RefSeq:NP_564597.1
STRING:3702.AT1G51740.1SUPFAM:SSF47661TAIR:AT1G51740tair10-symbols:ATSYP81
tair10-symbols:ATUFE1tair10-symbols:SYP81tair10-symbols:UFE1TMHMM:TMhelix
UniGene:At.37765UniProt:P59277
Coordinates (TAIR10) chr1:+:19189063..19191188
Molecular Weight (calculated) 35575.40 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.45
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRFRDRTED FKDSVRNSAV SIGYNESKVA STMASFIIHK PKERSPFTKA AFKTLDSIKE LELFMLKHRK DYVDLHRTTE QEKDSIEQEV AAFIKACKEQ
101: IDILINSIRN EEANSKGWLG LPADNFNADS IAHKHGVVLI LSEKLHSVTA QFDQLRATRF QDIINRAMPR RKPKRVIKEA TPINTTLGNS ESIEPDEIQA
201: QPRRLQQQQL LDDETQALQV ELSNLLDGAR QTETKMVEMS ALNHLMATHV LQQAQQIEFL YDQAVEATKN VELGNKELSQ AIQRNSSSRT FLLLFFFVLT
301: FSVLFLDWYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)