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AT2G42400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vascular plant one zinc finger protein 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vascular plant one zinc finger protein 2 (VOZ2); BEST Arabidopsis thaliana protein match is: vascular plant one zinc finger protein (TAIR:AT1G28520.2); Has 87 Blast hits to 82 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:4178eggNOG:ENOG410JSFReggNOG:ENOG41108UREMBL:AB125257
EMBL:AC005956EMBL:AF361831EMBL:AY078048EMBL:CP002685
EnsemblPlants:AT2G42400EnsemblPlants:AT2G42400.1entrez:818841GeneID:818841
Genevisible:Q9SLB9GO:GO:0005634GO:GO:0005737GO:GO:0006351
GO:GO:0009585GO:GO:0043565GO:GO:0045893GO:GO:0046872
GO:GO:0048574GO:GO:0048578Gramene:AT2G42400.1hmmpanther:PTHR33873
hmmpanther:PTHR33873:SF2HOGENOM:HOG000030392InParanoid:Q9SLB9IntAct:Q9SLB9
KEGG:ath:AT2G42400ncoils:CoilOMA:ITSQYDYPaxDb:Q9SLB9
Pfam:Q9SLB9PhylomeDB:Q9SLB9PIR:E84853PRIDE:Q9SLB9
PRO:PR:Q9SLB9Proteomes:UP000006548RefSeq:NP_565972.1STRING:3702.AT2G42400.1
TAIR:AT2G42400tair10-symbols:ATVOZ2tair10-symbols:VOZ2UniGene:At.28716
UniProt:Q9SLB9
Coordinates (TAIR10) chr2:-:17654490..17656281
Molecular Weight (calculated) 50568.60 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.81
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNHPKITSA HQNVEEKLRE LQERFCHLQA ARKEGRHGDL ALLEAQISQN IREWQAELTA PSPESSLLGE GISQFLEEFA PLLKLDEEDD ATSTLKEHAG
101: AKPDPEGFSQ SLCPPEWTSE NFSQSPFNGN FSCGFEDALN STETHGQQLH YGYEGFDPSI NSAPDFHDQK LSSNLDITSQ YDYIFSEVRQ ELDNSPSTKL
201: DSSEEIDNFA EFSTPSSVRV PPSAFLGPKC ALWDCTRPAQ GSEWYLDYCS NYHGTLALNE DSPGTAPVLR PGGISLKDNL LIDALRAKTQ GKNVGIPVCE
301: GAVNTKCPWN AAELFHLELV EGETIREWLF FDKPRRAYDS GNRKQRSLPD YSGRGWHESR KQLMKEQEGQ KRSYYMDPQP PGPFEWHLFE YQINESDACA
401: LYRLELKVGN GKKSPKGKIS KDPLADLQKK MGQFKVASDK PSPPTKGRKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)