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AT2G18790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome B
Curator
Summary (TAIR10)
Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response.
Computational
Description (TAIR10)
phytochrome B (PHYB); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome D (TAIR:AT4G16250.1); Has 25059 Blast hits to 24774 proteins in 3701 species: Archae - 266; Bacteria - 19279; Metazoa - 9; Fungi - 493; Plants - 3930; Viruses - 5; Other Eukaryotes - 1077 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-616-MONOMERBioGrid:1751DIP:DIP-31742NeggNOG:COG4251
eggNOG:ENOG410IJ3BEMBL:AC005724EMBL:AY466496EMBL:CP002685
EMBL:L09262EMBL:X17342EnsemblPlants:AT2G18790EnsemblPlants:AT2G18790.1
entrez:816394Gene3D:3.30.450.40Gene3D:3.30.565.10GeneID:816394
Genevisible:P14713GO:GO:0000155GO:GO:0005634GO:GO:0005829
GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0009409
GO:GO:0009584GO:GO:0009630GO:GO:0009638GO:GO:0009640
GO:GO:0009649GO:GO:0009687GO:GO:0009867GO:GO:0009883
GO:GO:0010018GO:GO:0010029GO:GO:0010148GO:GO:0010161
GO:GO:0010202GO:GO:0010218GO:GO:0010244GO:GO:0010374
GO:GO:0010617GO:GO:0015979GO:GO:0016604GO:GO:0016607
GO:GO:0017012GO:GO:0018298GO:GO:0031347GO:GO:0031516
GO:GO:0031517GO:GO:0042802GO:GO:0042803GO:GO:2000028
Gramene:AT2G18790.1hmmpanther:PTHR24423hmmpanther:PTHR24423:SF563HOGENOM:HOG000272703
InParanoid:P14713IntAct:P14713InterPro:IPR000014InterPro:IPR001294
InterPro:IPR003018InterPro:IPR003594InterPro:IPR003661InterPro:IPR005467
InterPro:IPR012129InterPro:IPR013515InterPro:IPR013516InterPro:IPR013654
InterPro:IPR013767InterPro:IPR016132InterPro:IPR029016iPTMnet:P14713
KEGG:ath:AT2G18790KO:K12121MINT:MINT-192399OMA:KTFGPEQ
PaxDb:P14713PDB:4OURPDBsum:4OURPfam:P14713
Pfam:PF00360Pfam:PF00512Pfam:PF00989Pfam:PF01590
Pfam:PF02518Pfam:PF08446Pfscan:PS50046Pfscan:PS50109
Pfscan:PS50112PhylomeDB:P14713PIR:B33473PIRSF:PIRSF000084
PRIDE:P14713PRINTS:PR01033PRO:PR:P14713PROSITE:PS00245
PROSITE:PS50046PROSITE:PS50109PROSITE:PS50112ProteinModelPortal:P14713
Proteomes:UP000006548RefSeq:NP_179469.1scanprosite:PS00245SMART:SM00065
SMART:SM00091SMART:SM00387SMART:SM00388SMR:P14713
STRING:3702.AT2G18790.1SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874
TAIR:AT2G18790tair10-symbols:HY3tair10-symbols:OOP1tair10-symbols:PHYB
TIGRfam:TIGR00229TIGRFAMs:TIGR00229UniGene:At.96UniProt:P14713
Coordinates (TAIR10) chr2:+:8140079..8144151
Molecular Weight (calculated) 129339.00 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.11
Length 1172 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)