AT3G62090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochrome interacting factor 3-like 2 | ||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. | ||||||||||||||||||||
| Computational Description (TAIR10) |
phytochrome interacting factor 3-like 2 (PIL2); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: red or far-red light signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 1467 Blast hits to 1461 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1464; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22989097..22990495 | ||||||||||||||||||||
| Molecular Weight (calculated) | 38451.70 Da | ||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||
| Length | 346 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELVFENGQI LAKGQRSNVS LHNQRTKSIM DLYEAEYNED FMKSIIHGGG GAITNLGDTQ VVPQSHVAAA HETNMLESNK HVDDSETLKA SSSKRMMVDY 101: HNRKKIKFIP PDEQSVVADR SFKLGFDTSS VGFTEDSEGS MYLSSSLDDE SDDARPQVPA RTRKALVKRK RNAEAYNSPE RNQRNDINKK MRTLQNLLPN 201: SHKDDNESML DEAINYMTNL QLQVQMMTMG NRFVTPSMMM PLGPNYSQMG LAMGVGMQMG EQQFLPAHVL GAGLPGINDS ADMLRFLNHP GLMPMQNSAP 301: FIPTENCSPQ SVPPSCAAFP NQIPNPNSLS NLDGATLHKK SRKTNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)