suba logo
AT1G09530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome interacting factor 3
Curator
Summary (TAIR10)
Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.
Computational
Description (TAIR10)
phytochrome interacting factor 3 (PIF3); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3-like 1 (TAIR:AT2G46970.1); Has 4326 Blast hits to 4310 proteins in 315 species: Archae - 0; Bacteria - 2; Metazoa - 732; Fungi - 183; Plants - 3377; Viruses - 7; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:22720DIP:DIP-33892NeggNOG:ENOG410IV8VeggNOG:ENOG4111SYS
EMBL:AC003970EMBL:AF088280EMBL:AF100166EMBL:AF251693
EMBL:AK117255EMBL:CP002684EMBL:EF193482EMBL:EF193483
EMBL:EF193484EMBL:EF193485EMBL:EF193486EMBL:EF193487
EMBL:EF193488EMBL:EF193489EMBL:EF193490EMBL:EF193491
EMBL:EF193492EMBL:EF193493EMBL:EF193494EMBL:EF193495
EMBL:EF193496EnsemblPlants:AT1G09530EnsemblPlants:AT1G09530.1EnsemblPlants:AT1G09530.2
entrez:837479Gene3D:4.10.280.10GeneID:837479Genevisible:O80536
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009585GO:GO:0009639GO:GO:0009704
GO:GO:0009740GO:GO:0010017GO:GO:0031539GO:GO:0042802
Gramene:AT1G09530.1Gramene:AT1G09530.2hmmpanther:PTHR12565hmmpanther:PTHR12565:SF178
InParanoid:O80536IntAct:O80536InterPro:IPR011598KEGG:ath:AT1G09530
KO:K12126MINT:MINT-8058904OMA:DNQKACLPaxDb:O80536
Pfam:O80536Pfam:PF00010Pfscan:PS50888PhylomeDB:O80536
PIR:H86228PRIDE:O80536PRO:PR:O80536PROSITE:PS50888
ProteinModelPortal:O80536Proteomes:UP000006548RefSeq:NP_172424.1RefSeq:NP_849626.1
SMART:SM00353SMR:O80536STRING:3702.AT1G09530.1SUPFAM:SSF47459
TAIR:AT1G09530tair10-symbols:PAP3tair10-symbols:PIF3tair10-symbols:POC1
UniGene:At.10926UniProt:O80536
Coordinates (TAIR10) chr1:+:3077216..3079367
Molecular Weight (calculated) 56993.40 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.73
Length 524 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)