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AT5G57240.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.838
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 4C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 4C (ORP4C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.1); Has 2168 Blast hits to 2165 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1089; Fungi - 634; Plants - 225; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRW6eggNOG:KOG2210EMBL:AB019233EMBL:AK117264
EMBL:CP002688EnsemblPlants:AT5G57240EnsemblPlants:AT5G57240.1EnsemblPlants:AT5G57240.2
entrez:835830GeneID:835830Genevisible:Q9LVD4GO:GO:0006869
GO:GO:0008289Gramene:AT5G57240.1Gramene:AT5G57240.2hmmpanther:PTHR10972
hmmpanther:PTHR10972:SF27HOGENOM:HOG000242906InParanoid:Q9LVD4InterPro:IPR000648
InterPro:IPR018494iPTMnet:Q9LVD4KEGG:ath:AT5G57240ncoils:Coil
OMA:VWGEVSEPANTHER:PTHR10972PaxDb:Q9LVD4Pfam:PF01237
Pfam:Q9LVD4PhylomeDB:Q9LVD4PRIDE:Q9LVD4PRO:PR:Q9LVD4
PROSITE:PS01013ProteinModelPortal:Q9LVD4Proteomes:UP000006548RefSeq:NP_001032088.1
RefSeq:NP_200534.1scanprosite:PS01013SMR:Q9LVD4STRING:3702.AT5G57240.1
SUPFAM:0051579TAIR:AT5G57240tair10-symbols:ORP4CUniGene:At.66788
UniProt:Q9LVD4
Coordinates (TAIR10) chr5:+:23193449..23195303
Molecular Weight (calculated) 42970.80 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.44
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKHVMLVKP FSLEDEKDSE NTPPNLIQRI LSLFKNVRPG SDLTNFQLPP QMNLARSQLQ CYGEIVYSFD GHDLLGECSR RDKPIERMKA MVTWYISTLR
101: PLIFGLAPYN PVIGETHHVS NGHINVLAEQ ISHHPPVSAL HATHEKENVD VLLCQYFTPK FRGAYVDVEV KGKRVVKLLN HKETYEMNQP KLLMTFLPAM
201: GAHWAGKIVI KCPETGLGAE LQLLSDSFLS RFTGNNKRAI KGKIFESSSR KQLYEISGHW DRTVTAKNTK TGQLEVIYKA SENIAKLKTP IVENLQEVSE
301: SESAVVWGEV SEGIVTNNWE KAREAKRDVE EKQRESLRKR KASGQSWIPK HFSVARTGKD WDCVPLQPTV PRAPIVVPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)