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AT4G34250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.697
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 16
Curator
Summary (TAIR10)
Encodes KCS16, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 16 (KCS16); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: fatty acid elongation, response to light stimulus, very long-chain fatty acid metabolic process, response to osmotic stress; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 8 (TAIR:AT2G15090.1); Has 4922 Blast hits to 4907 proteins in 1227 species: Archae - 0; Bacteria - 1689; Metazoa - 0; Fungi - 21; Plants - 3079; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G34250-MONOMERBioGrid:14856EC:2.3.1.199eggNOG:COG3424
eggNOG:ENOG410JWTKEMBL:AK229262EMBL:AL035521EMBL:AL161585
EMBL:CP002687EnsemblPlants:AT4G34250EnsemblPlants:AT4G34250.1entrez:829574
ExpressionAtlas:Q9SYZ0Gene3D:3.40.47.10GeneID:829574Genevisible:Q9SYZ0
GO:GO:0006633GO:GO:0009416GO:GO:0016021GO:GO:0016747
Gramene:AT4G34250.1gramene_pathway:2.3.1.-gramene_pathway:PWY-5080hmmpanther:PTHR31561
HOGENOM:HOG000238893InParanoid:Q9SYZ0InterPro:IPR012392InterPro:IPR013601
InterPro:IPR013747InterPro:IPR016039iPTMnet:Q9SYZ0KEGG:00061+2.3.1.180
KEGG:00062+2.3.1.199KEGG:ath:AT4G34250KO:K15397MINT:MINT-8066231
OMA:YECATQEPANTHER:PTHR31561PaxDb:Q9SYZ0Pfam:PF08392
Pfam:PF08541Pfam:Q9SYZ0PhylomeDB:Q9SYZ0PIR:T04771
PIRSF:PIRSF036417PRIDE:Q9SYZ0PRO:PR:Q9SYZ0ProteinModelPortal:Q9SYZ0
Proteomes:UP000006548RefSeq:NP_195151.1SMR:Q9SYZ0STRING:3702.AT4G34250.1
SUPFAM:SSF53901TAIR:AT4G34250tair10-symbols:KCS16TMHMM:TMhelix
UniGene:At.43164UniPathway:UPA00094UniProt:A4VCL7UniProt:Q9SYZ0
Coordinates (TAIR10) chr4:+:16394749..16396230
Molecular Weight (calculated) 55780.90 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.07
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYPMKKVKI FFNYLMAHRF KLCFLPLMVA IAVEASRLST QDLQNFYLYL QNNHTSLTMF FLYLALGSTL YLMTRPKPVY LVDFSCYLPP SHLKASTQRI
101: MQHVRLVREA GAWKQESDYL MDFCEKILER SGLGQETYVP EGLQTLPLQQ NLAVSRIETE EVIIGAVDNL FRNTGISPSD IGILVVNSST FNPTPSLSSI
201: LVNKFKLRDN IKSLNLGGMG CSAGVIAIDA AKSLLQVHRN TYALVVSTEN ITQNLYMGNN KSMLVTNCLF RIGGAAILLS NRSIDRKRAK YELVHTVRVH
301: TGADDRSYEC ATQEEDEDGI VGVSLSKNLP MVAARTLKIN IATLGPLVLP ISEKFHFFVR FVKKKFLNPK LKHYIPDFKL AFEHFCIHAG GRALIDEMEK
401: NLHLTPLDVE ASRMTLHRFG NTSSSSIWYE LAYTEAKGRM TKGDRIWQIA LGSGFKCNSS VWVALRNVKP STNNPWEQCL HKYPVEIDID LKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)