AT2G42840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
| FP Images |
7-day old Arabidopsis seedling (no marker)
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : protodermal factor 1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
protodermal factor 1 (PDF1); Has 74620 Blast hits to 36810 proteins in 1713 species: Archae - 153; Bacteria - 12776; Metazoa - 27126; Fungi - 11565; Plants - 10582; Viruses - 2385; Other Eukaryotes - 10033 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:17826327..17827426 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32228.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.91 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGMVSFAVW ALFAALLSQQ LFASVASVRF EDAKTYYLSP PSGSHGTPPS HTPPSSNCGS PPYDPSPSTP SHPSPPSHTP TPSTPSHTPT PHTPSHTPTP 101: HTPPCNCGSP PSHPSTPSHP STPSHPTPSH PPSGGYYSSP PPRTPVVVTP PSPIVDPGTP IIGGSPPTPI IDPGTPGTPF IPAPFPPITG TCDYWRNHPT 201: LIWGLLGWWG TVGGAFGTVS IPSSIPGFDP HMNLLQALSN TRSDPIGALY REGTASWLNS MVNHKFPFTT PQVRDHFVAG LSSNKAATKQ AHTFKLANEG 301: RLKPRV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)