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AT1G06360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Fatty acid desaturase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Fatty acid desaturase family protein; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; INVOLVED IN: oxidation reduction, lipid metabolic process; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1, core (InterPro:IPR015876), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: Fatty acid desaturase family protein (TAIR:AT1G06350.1); Has 3432 Blast hits to 3432 proteins in 822 species: Archae - 0; Bacteria - 1534; Metazoa - 802; Fungi - 234; Plants - 106; Viruses - 4; Other Eukaryotes - 752 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06360-MONOMEREC:1.14.19.-eggNOG:COG1398eggNOG:KOG1600
EMBL:AC068143EMBL:AF332427EMBL:CP002684EnsemblPlants:AT1G06360
EnsemblPlants:AT1G06360.1entrez:837147GeneID:837147Genevisible:Q9LMI3
GO:GO:0005789GO:GO:0006636GO:GO:0016021GO:GO:0016717
Gramene:AT1G06360.1gramene_pathway:1.14.99.-gramene_pathway:PWY-782hmmpanther:PTHR11351
hmmpanther:PTHR11351:SF2HOGENOM:HOG000270353InParanoid:Q9LMI3InterPro:IPR005804
InterPro:IPR015876KEGG:ath:AT1G06360OMA:WICDTRYPaxDb:Q9LMI3
Pfam:PF00487Pfam:Q9LMI3PhylomeDB:Q9LMI3PIR:D86199
PRIDE:Q9LMI3PRINTS:PR00075PRO:PR:Q9LMI3ProteinModelPortal:Q9LMI3
Proteomes:UP000006548Reactome:R-ATH-75105RefSeq:NP_172125.1SMR:Q9LMI3
STRING:3702.AT1G06360.1TAIR:AT1G06360TMHMM:TMhelixUniGene:At.17049
UniGene:At.27832UniPathway:UPA00658UniProt:Q9LMI3
Coordinates (TAIR10) chr1:-:1939173..1940417
Molecular Weight (calculated) 35511.70 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.14
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MCDPIREDGS NKRGAVSKEK RPYIHREWSW ADIIRALTVI NVHFLCLLAP FNYKWEALRF GFVLYALTSL SITFSYHRNL AHRSFKLPKW LEYPLAYFAV
101: FALQGDPLDW VSIHRFHHQF TDSDRDPHSP IEGFWFSHVW WICDTRYIKY KCGGRNNVMD LKQQWFYWFL RMTIGFHVLM FWTVLYLYGG LPYLTCGGGV
201: GGVIGYHVTW LVNSACHIWG SRSWKTKDTS RNVWWLSLFT MGESWHNNHH AFESSARQGL EWWQIDITWY LIRLFEVLGL ATDVKLPSEI QKQKLALTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)