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AT3G21090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT1G51500.1); Has 380370 Blast hits to 349027 proteins in 4089 species: Archae - 6846; Bacteria - 303738; Metazoa - 8409; Fungi - 6671; Plants - 5430; Viruses - 12; Other Eukaryotes - 49264 (source: NCBI BLink).
Protein Annotations
BioGrid:6993eggNOG:COG1131eggNOG:KOG0061EMBL:AP000604
EMBL:AY093054EMBL:BT000405EMBL:CP002686EnsemblPlants:AT3G21090
EnsemblPlants:AT3G21090.1entrez:821661Gene3D:3.40.50.300GeneID:821661
Genevisible:Q8RWI9GO:GO:0005524GO:GO:0005886GO:GO:0016021
GO:GO:0042626GO:GO:0055085GO:GO:0080167Gramene:AT3G21090.1
hmmpanther:PTHR19241hmmpanther:PTHR19241:SF247HOGENOM:HOG000166547InParanoid:Q8RWI9
IntAct:Q8RWI9InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR017871InterPro:IPR027417iPTMnet:Q8RWI9KEGG:ath:AT3G21090
OMA:WTRIISYPaxDb:Q8RWI9Pfam:PF00005Pfam:PF01061
Pfam:Q8RWI9Pfscan:PS50893PhylomeDB:Q8RWI9PRIDE:Q8RWI9
PRO:PR:Q8RWI9PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q8RWI9
Proteomes:UP000006548Reactome:R-ATH-1369062Reactome:R-ATH-265473RefSeq:NP_188746.2
scanprosite:PS00211SMART:SM00382SMR:Q8RWI9STRING:3702.AT3G21090.1
SUPFAM:SSF52540TAIR:AT3G21090TMHMM:TMhelixUniGene:At.40442
UniProt:Q8RWI9
Coordinates (TAIR10) chr3:-:7391497..7394933
Molecular Weight (calculated) 77241.90 Da
IEP (calculated) 9.60
GRAVY (calculated) 0.08
Length 691 amino acids
Sequence (TAIR10)
(BLAST)
001: MELEGSSSGR RQLPSKLEMS RGAYLAWEDL TVVIPNFSDG PTRRLLQRLN GYAEPGRIMA IMGPSGSGKS TLLDSLAGRL ARNVVMTGNL LLNGKKARLD
101: YGLVAYVTQE DVLLGTLTVR ETITYSAHLR LPSDMSKEEV SDIVEGTIME LGLQDCSDRV IGNWHARGVS GGERKRVSIA LEILTRPQIL FLDEPTSGLD
201: SASAFFVIQA LRNIARDGRT VISSVHQPSS EVFALFDDLF LLSSGESVYF GEAKSAVEFF AESGFPCPKK RNPSDHFLRC INSDFDTVTA TLKGSQRIQE
301: TPATSDPLMN LATSVIKARL VENYKRSKYA KSAKSRIREL SNIEGLEMEI RKGSEATWWK QLRTLTARSF INMCRDVGYY WTRIISYIVV SISVGTIFYD
401: VGYSYTSILA RVSCGGFITG FMTFMSIGGF PSFLEEMKVF YKERLSGYYG VSVYILSNYI SSFPFLVAIS VITGTITYNL VKFRPGFSHY AFFCLNIFFS
501: VSVIESLMMV VASVVPNFLM GLITGAGLIG IIMMTSGFFR LLPDLPKIFW RYPVSYISYG SWAIQGGYKN DFLGLEFEPL FPGEPKMTGE EVIEKVFGVK
601: VTYSKWWDLA AVVAILVCYR LLFFVVLKLR ERAGPALKAI QAKRTMRNLD RRPSFKRMPS LSLSLSSMSS RRHQPLRSLS SQEGLNSPIH Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)