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AT1G07860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.747
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G07870.2); Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JMT6eggNOG:ENOG41117JFEMBL:AY074492EMBL:CP002684
EnsemblPlants:AT1G07860EnsemblPlants:AT1G07860.1entrez:837301GeneID:837301
GO:GO:0016021Gramene:AT1G07860.1hmmpanther:PTHR34189hmmpanther:PTHR34189:SF3
HOGENOM:HOG000149129IntAct:Q8RY98KEGG:ath:AT1G07860OMA:ISSSHIG
Proteomes:UP000006548RefSeq:NP_172264.1STRING:3702.AT1G07860.1TAIR:AT1G07860
TMHMM:TMhelixUniGene:At.14831UniProt:Q8RY98
Coordinates (TAIR10) chr1:-:2428942..2429431
Molecular Weight (calculated) 14821.70 Da
IEP (calculated) 10.60
GRAVY (calculated) 0.07
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERSFSQLP ISSSHIGRRT GNTRRGIFPV SEYWIHAIPV IVFLCFFTLW IFSHSVSVMN DGEIMSIHRL EKSMAVRNES HVSLAILASS AVSPASSALV
101: AVVSTNQNLT TFHNATQSQQ NATQSVNKAK QPHAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)