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AT1G79360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18710496 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : organic cation/carnitine transporter 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
organic cation/carnitine transporter 2 (2-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, ion transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Organic cation transport protein (InterPro:IPR004749), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 3 (TAIR:AT1G16390.1); Has 24066 Blast hits to 23860 proteins in 1933 species: Archae - 496; Bacteria - 11644; Metazoa - 4565; Fungi - 4772; Plants - 1707; Viruses - 0; Other Eukaryotes - 882 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG0255EMBL:AC002986EMBL:CP002684
EnsemblPlants:AT1G79360EnsemblPlants:AT1G79360.1entrez:844274GeneID:844274
Genevisible:O64515GO:GO:0005524GO:GO:0006811GO:GO:0009705
GO:GO:0016021GO:GO:0022891Gramene:AT1G79360.1hmmpanther:PTHR24064
hmmpanther:PTHR24064:SF242HOGENOM:HOG000234568InParanoid:O64515InterPro:IPR005828
InterPro:IPR020846KEGG:ath:AT1G79360OMA:ISNICILPaxDb:O64515
Pfam:O64515Pfam:PF00083Pfscan:PS50850PhylomeDB:O64515
PIR:T01019PRIDE:O64515PRO:PR:O64515PROSITE:PS50850
ProteinModelPortal:O64515Proteomes:UP000006548Reactome:R-ATH-112311Reactome:R-ATH-181430
Reactome:R-ATH-2161517Reactome:R-ATH-442660Reactome:R-ATH-549127RefSeq:NP_178054.1
SMR:O64515STRING:3702.AT1G79360.1SUPFAM:SSF103473TAIR:AT1G79360
tair10-symbols:2-Octtair10-symbols:ATOCT2tair10-symbols:OCT2TMHMM:TMhelix
UniGene:At.34126UniProt:O64515
Coordinates (TAIR10) chr1:-:29854140..29855723
Molecular Weight (calculated) 57753.60 Da
IEP (calculated) 7.26
GRAVY (calculated) 0.48
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEPTQPLLT DSNSSSPRSL DDTIESYIGS FGWAQFLQAA LVSFSGVFDA QQTFISVFTD SEPTWHCTDS NSICHESISN ICILPKTAWS WDYSPHVSVI
101: SEWGLQCAGS FVKGLPESSF FVGCLIGGLV LSTLADSSLG RKNMLFLSCL VMAISTMLTV FSPNIWVYAV LRFVNGFGRA TIGTCALVLS TELVGKKWRG
201: RVGIMSFFGF MLGFLSLPLM AYMNRGSSWR ILYAWTSIPT IIYCVLVRFF VCESPRWLFV RGRREEAISI LKRVASIPST DVSSGGAISM SFSSLPFEED
301: EEKPSTNVNI FTTMKVLVEK RWALKRLSAV MAIAFGIGLV YYGMPLALSN LDFNIYLSAA FNALMDLPAN LITLFLVDKL SRRNALIGFT ALGGVSSVLI
401: FALHNMRIGN HGALQLALEL ISYFSACSAF NMEMIYTIEL FPTCVRNSAI AMARQALVLG GVFSPIMVAA GRKNAFWSFG LFGLAIGLLG LFAVGLPETR
501: GSDLCDTMDE EECKDRRSKV AVNNVIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)