AT1G79360.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : organic cation/carnitine transporter 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
organic cation/carnitine transporter 2 (2-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, ion transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Organic cation transport protein (InterPro:IPR004749), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 3 (TAIR:AT1G16390.1); Has 24066 Blast hits to 23860 proteins in 1933 species: Archae - 496; Bacteria - 11644; Metazoa - 4565; Fungi - 4772; Plants - 1707; Viruses - 0; Other Eukaryotes - 882 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:29854140..29855723 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 57753.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAEPTQPLLT DSNSSSPRSL DDTIESYIGS FGWAQFLQAA LVSFSGVFDA QQTFISVFTD SEPTWHCTDS NSICHESISN ICILPKTAWS WDYSPHVSVI 101: SEWGLQCAGS FVKGLPESSF FVGCLIGGLV LSTLADSSLG RKNMLFLSCL VMAISTMLTV FSPNIWVYAV LRFVNGFGRA TIGTCALVLS TELVGKKWRG 201: RVGIMSFFGF MLGFLSLPLM AYMNRGSSWR ILYAWTSIPT IIYCVLVRFF VCESPRWLFV RGRREEAISI LKRVASIPST DVSSGGAISM SFSSLPFEED 301: EEKPSTNVNI FTTMKVLVEK RWALKRLSAV MAIAFGIGLV YYGMPLALSN LDFNIYLSAA FNALMDLPAN LITLFLVDKL SRRNALIGFT ALGGVSSVLI 401: FALHNMRIGN HGALQLALEL ISYFSACSAF NMEMIYTIEL FPTCVRNSAI AMARQALVLG GVFSPIMVAA GRKNAFWSFG LFGLAIGLLG LFAVGLPETR 501: GSDLCDTMDE EECKDRRSKV AVNNVIA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)