suba logo
AT3G20660.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18710496 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : organic cation/carnitine transporter4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
organic cation/carnitine transporter4 (4-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: pseudogene (TAIR:AT1G73220.1); Has 27723 Blast hits to 27519 proteins in 2032 species: Archae - 544; Bacteria - 15020; Metazoa - 4940; Fungi - 4480; Plants - 1745; Viruses - 0; Other Eukaryotes - 994 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IRIEeggNOG:ENOG410XSRIEMBL:AK176424EMBL:AP002034
EMBL:BT010744EMBL:CP002686EnsemblPlants:AT3G20660EnsemblPlants:AT3G20660.1
entrez:821613GeneID:821613Genevisible:Q9LHQ6GO:GO:0005524
GO:GO:0006811GO:GO:0009535GO:GO:0009705GO:GO:0016021
GO:GO:0022891GO:GO:0042631Gramene:AT3G20660.1hmmpanther:PTHR24064
hmmpanther:PTHR24064:SF292HOGENOM:HOG000234568InParanoid:Q9LHQ6InterPro:IPR005828
InterPro:IPR005829InterPro:IPR020846KEGG:ath:AT3G20660OMA:YFFSAGI
PaxDb:Q9LHQ6Pfam:PF00083Pfam:Q9LHQ6Pfscan:PS50850
PhylomeDB:Q9LHQ6PRIDE:Q9LHQ6PRO:PR:Q9LHQ6PROSITE:PS00216
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q9LHQ6Proteomes:UP000006548
Reactome:R-ATH-112311Reactome:R-ATH-181430Reactome:R-ATH-2161517Reactome:R-ATH-442660
Reactome:R-ATH-549127RefSeq:NP_188702.2scanprosite:PS00216scanprosite:PS00217
SMR:Q9LHQ6STRING:3702.AT3G20660.1SUPFAM:SSF103473TAIR:AT3G20660
tair10-symbols:4-Octtair10-symbols:AtOCT4TCDB:2.A.1.19.43TMHMM:TMhelix
UniGene:At.50209UniGene:At.71832UniProt:Q9LHQ6
Coordinates (TAIR10) chr3:-:7225271..7228510
Molecular Weight (calculated) 57505.20 Da
IEP (calculated) 6.01
GRAVY (calculated) 0.39
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MESPEDRNGN DVRQPLLEKI PVKKEAEGEE RLCIDEMLQR YCGEFGRWQL KHFVLTCIAW ALEAFHTMVM IFADQEPEWR CVGSDCRVGS LNCELDPSSW
101: EWTAGKGSST VSEWGLICGD KYKVGLVQAL FFAGCMIGAG VFGHLSDSKL GRKGSLTVVC IINAIFGIAT AFSPNYWTYV VLRFLTGFST GGVGLTAFVL
201: ATEPIGPSKR GVAGMSTFYF FSAGIAVLSG IAYVFRSWRE LFIVSSLPSL LFLLIVIPFI SESPRWYLVR GKVDEAMKLM HSIAKTNGRH IPAGVTLALD
301: DDVENNNGER NTAVEGSLKD VILSPLMRMR LVISVAISFT VSIVYYGLSL NVGNLKTNLY LNVFVNAVSE MPAFAITAVL LDKYGRKPLS IGTQWFSCVF
401: CLVGFSVWGA GPWKSVRMVS GVLGIFGMAG TYNLLFIYIA ELFPTVVRNA ALGCATQAAQ MGAILAPFVV VLGEELPFGV FAVCGLVGGG LAFYLPETLN
501: KPLYDTMFGM HEAESESNRE RGEVIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)