suba logo
AT3G04350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.557
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF946)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT5G18490.1); Has 389 Blast hits to 369 proteins in 101 species: Archae - 0; Bacteria - 21; Metazoa - 15; Fungi - 143; Plants - 203; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHBVeggNOG:ENOG41123CAEMBL:AC016829EMBL:AY052713
EMBL:AY113068EMBL:CP002686EnsemblPlants:AT3G04350EnsemblPlants:AT3G04350.1
entrez:819590GeneID:819590Gramene:AT3G04350.1hmmpanther:PTHR17204
hmmpanther:PTHR17204:SF30HOGENOM:HOG000239723InterPro:IPR009291KEGG:ath:AT3G04350
OMA:TESCETSPfam:PF06101PhylomeDB:Q9M8Z1Proteomes:UP000006548
RefSeq:NP_566224.1STRING:3702.AT3G04350.1TAIR:AT3G04350UniGene:At.26482
UniProt:Q9M8Z1
Coordinates (TAIR10) chr3:-:1153972..1156469
Molecular Weight (calculated) 63012.30 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.33
Length 567 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGCDCFYWS RGISELDSES SEPKPFSLPA PLPSWPQGKG FATGRISLGE IEVVKITKFH RVWSSDSSHD KSKRATFYRA DDIPEGFHCL GHYCQPTDQP
101: LRGYVLAART SKAVNADDFP PLKKPVSYSL VWSADSEKNG GGYFWLPNPP VGYRAMGVIV THEPGEPETE EVRCVREDLT ESCETSEMIL EVGSSKKSNG
201: SSSPFSVWST RPCERGMLSQ GVAVGSFFCC TYDLSSERTV PDIGCLKNLD PTLHAMPNLD QVHAVIEHFG PTVYFHPEEA YMPSSVQWFF KNGALLYRSG
301: KSEGQPINST GSNLPAGGCN DMDFWIDLPE DEEAKSNLKK GNLESSELYV HVKPALGGTF TDIVMWIFCP FNGPATLKIG LFTLPMTRIG EHVGDWEHFT
401: FRICNFSGEL WQMFFSQHSG GGWVDASDIE FVKDNKPAVY SSKHGHASFP HPGMYLQGSS KLGIGVRNDV AKSKYIVDSS QRYVIVAAEY LGKGAVIEPC
501: WLQYMREWGP TIAYDSGSEI NKIMNLLPLV VRFSIENIVD LFPIALYGEE GPTGPKEKDN WEGDEMC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)