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AT1G05890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 592; Plants - 643; Viruses - 7; Other Eukaryotes - 506 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-EMBL:AC009999EMBL:AJ510208EMBL:AY120783
EMBL:BT000064EMBL:CP002684EnsemblPlants:AT1G05890EnsemblPlants:AT1G05890.1
entrez:837099ExpressionAtlas:Q8L829Gene3D:3.30.40.10GeneID:837099
Genevisible:Q8L829GO:GO:0003676GO:GO:0004842GO:GO:0008270
GO:GO:0016874hmmpanther:PTHR11685hmmpanther:PTHR11685:SF154HOGENOM:HOG000243301
InParanoid:Q8L829InterPro:IPR001841InterPro:IPR002867InterPro:IPR013083
InterPro:IPR031127iPTMnet:Q8L829ncoils:CoilPANTHER:PTHR11685
Pfam:PF01485Pfam:Q8L829Pfscan:PS50089PhylomeDB:Q8L829
PIR:G86193PRIDE:Q8L829PRO:PR:Q8L829PROSITE:PS50089
ProteinModelPortal:Q8L829Proteomes:UP000006548RefSeq:NP_172080.2SMART:SM00647
SMR:Q8L829SUPFAM:SSF57850TAIR:AT1G05890tair10-symbols:ARI5
tair10-symbols:ATARI5UniGene:At.42364UniPathway:UPA00143UniProt:Q8L829
Coordinates (TAIR10) chr1:+:1779631..1784166
Molecular Weight (calculated) 62462.70 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.66
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)