AT5G43930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin family protein / WD-40 repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G04140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17677047..17680577 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78942.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 726 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTQSICSSSQ DQSSSPRSLI TPRKSATKFH RRRGRSVFNM LVQREMSPKA KFVPRKRWGK SRWYTDSSCG TNNESMKETG QSLTSWVEAE SLQHLSAKYC 101: PLGAPPRSTI AAAFSTDGRT LASTHGDHTV KIIDCETGNC LKVLTGHRRT PWVVRFHPHH SEIVASGSLD LEVRLWNTTT SECIRSHLFY RPIASIAFHA 201: EGELLAVASG HKLHMWHYNR RGEGSSPTVV LKTRRSLRAV HFHPHGAPLL LTAEVNEIDS LDSSMSRATS MGYLRYPPPA ILFTSTESNQ TSLAAENENR 301: TSSPPLPLAT SSGPSGPNSV PGNSPSNIFL TRAGDRTSPA VDGMDVDEAQ PVGRNGIPSQ VSNRSDFPEL GQIRQLFHFR DRVSWELPFL QGWLMAQGHG 401: VANPVVTPTG SSNHGISAPS STASLEAAVA LLEIPSGVNL HAVSRRGGAQ EQTSQPQFSR TGLPEGVSSR NTQHGSDAQP VVNRVQSELA TSIAASAAAA 501: AAAELPCTVK LRMWSHDIKD PYAQLKSDRC LFTIPHAVLC SEMGAHYSPC GRYLAACVAC VFPHGEIDPG LQTQAQQDSG LATSPTRHPV TAHQVIYELR 601: VYSLQKESFG SVLVSRAIRA AHCLTSIQFS PTSEHILLAY GRRHGSLLRS IVSDGETTSH FFTVLEIYRV SDMELVRVLP SSEDEVNVAC FHPSPGGGLV 701: YGTKEGKLRI FQYNTAATSN FTGPNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)