suba logo
AT1G04830.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G13730.1); Has 3724 Blast hits to 3613 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1821; Fungi - 641; Plants - 593; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG4567EMBL:BT004154EMBL:BT005468
EMBL:CP002684EnsemblPlants:AT1G04830EnsemblPlants:AT1G04830.1entrez:839404
ExpressionAtlas:Q84K76GeneID:839404Gramene:AT1G04830.1hmmpanther:PTHR22957
hmmpanther:PTHR22957:SF329HOGENOM:HOG000006332InterPro:IPR000195Pfam:PF00566
Pfscan:PS50086PhylomeDB:Q84K76PROSITE:PS50086Proteomes:UP000006548
RefSeq:NP_171975.2SMART:SM00164SMR:Q84K76STRING:3702.AT1G04830.2
SUPFAM:SSF47923TAIR:AT1G04830UniGene:At.42429UniProt:Q84K76
Coordinates (TAIR10) chr1:-:1359087..1361844
Molecular Weight (calculated) 51097.90 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.42
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRKKVPEWL NSTMWSTPPP PSSYDDGLLR HSPVTKMKEE AESISVAPRL NSAPPPSSNT SVPSPSHRPR NGNSISGGSG EYGHSVGPSA EDFSRQAHVS
101: AELSKKVINM KELRSLALQS LPDSPGIRST VWKLLLGYLP PERSLWSTEL KQKRSQYKHY KDELLTSPSE ITWKMVRSKG FDNYDLKSES RCMLARSRIT
201: DEDHPLSLGK ASIWNTYFQD TETIEQIDRD VKRTHPDIPF FSGESSFARS NQESMKNILL VFAKLNQGIR YVQGMNEILA PIFYVFRNDP DEDSSSHAEA
301: DAFFCFVELL SGFRDFYCQQ LDNSVVGIRS AITRLSQLVR KHDEELWRHL EITTKVNPQF YAFRWITLLL TQEFSFFDSL HIWDALLSDP EGPLESLLGI
401: CCAMLVLVRR RLIAGDFTSN MKLLQHYPTT NISHLLYVAN KLRSKMLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)