AT3G14010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CTC-interacting domain 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
CTC-interacting domain 4 (CID4); CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13166 Blast hits to 6516 proteins in 672 species: Archae - 9; Bacteria - 1476; Metazoa - 3492; Fungi - 1698; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:4637164..4640691 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 65713.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 595 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR 101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE 201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT 301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG 401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA 501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)