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AT3G14010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTC-interacting domain 4
Curator
Summary (TAIR10)
hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2.
Computational
Description (TAIR10)
CTC-interacting domain 4 (CID4); CONTAINS InterPro DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 3 (TAIR:AT1G54170.1); Has 13166 Blast hits to 6516 proteins in 672 species: Archae - 9; Bacteria - 1476; Metazoa - 3492; Fungi - 1698; Plants - 664; Viruses - 94; Other Eukaryotes - 5733 (source: NCBI BLink).
Protein Annotations
BioGrid:5949eggNOG:COG5180eggNOG:KOG2375EMBL:AB019229
EMBL:AY045922EMBL:AY079365EMBL:CP002686EnsemblPlants:AT3G14010
EnsemblPlants:AT3G14010.1EnsemblPlants:AT3G14010.2EnsemblPlants:AT3G14010.3entrez:820615
ExpressionAtlas:Q94AM9GeneID:820615Genevisible:Q94AM9GO:GO:0010494
GO:GO:0010603GO:GO:0034063GO:GO:0044822hmmpanther:PTHR12854
HOGENOM:HOG000083264InParanoid:Q94AM9IntAct:Q94AM9InterPro:IPR009604
InterPro:IPR009818InterPro:IPR025852iPTMnet:Q94AM9KEGG:ath:AT3G14010
ncoils:CoilOMA:FDEEARYPaxDb:Q94AM9Pfam:PF06741
Pfam:PF07145Pfam:PF14438Pfam:Q94AM9PhylomeDB:Q94AM9
PRIDE:Q94AM9PRO:PR:Q94AM9ProteinModelPortal:Q94AM9Proteomes:UP000006548
RefSeq:NP_001078150.1RefSeq:NP_001078151.1RefSeq:NP_566471.1SMART:SM01272
STRING:3702.AT3G14010.1TAIR:AT3G14010tair10-symbols:CID4UniGene:At.5643
UniProt:Q94AM9
Coordinates (TAIR10) chr3:+:4637164..4640691
Molecular Weight (calculated) 65713.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.91
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG
401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA
501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)