AT1G18700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Thioredoxin-like fold (InterPro:IPR012336); Has 368 Blast hits to 366 proteins in 88 species: Archae - 2; Bacteria - 18; Metazoa - 188; Fungi - 16; Plants - 102; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6437591..6443046 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79035.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||
| Length | 700 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKETPASSS MPSGLKAYTV PIFLFVLAMF FQLFLLPRSF PPSHYDVLGV KMYSSVDDVK DAYQTVASKW DSGSGVSLPA DFVKIQYAYE LLTNLVWKRD 101: YDLYAIDESV HIIEELEKQY AVEDFAKIKL PLLEVVSYEP EREGFMSITS QDFASKFQDS KPWLIQVYSS GSNSSAQFAT VWRRIVALLD GVANHAMLEL 201: GDVQLVTYLA EKKPTGQVFF RKGLPSIFSF PPNCKTADCL IRFEGELSAD AITDWFATTV LGLPRVFYHT KETLVSKFLS KVPPNKVKVI LFSQTGERAT 301: PIVRQAAKDY WNFASLSHVL WREEDASFWW NALEVESAPA IVIMKDPGSK PVVYHGSGNR TWFLDILEQN KQLLLPQLRS TTSMELGCDA RGYSRAGYDK 401: VTWYCAILVG RQSVELNKMR ETMCRVQDAL SKYDDSDDAS KDPSITPAAS AHKSKRLSFA WLDGEAQNKY CFFYVQSETS YDTCGTRRAP IDVPRILIVR 501: YHRNATETAN AEQKSSKWPK TVWQSEADDV DPAAQLVVSY DGTAEIPQII KWLSKMVDDG DNRNLPFYRA KTPELVPESA EPMRSGVPKT VKATQKLLSL 601: WNRIKDYLAD PRMGPTLLLG ALLSAGNVWW MRSRSSTQQP AQTNQPSPNQ PADNVEEKKK KERKREQRRR NAKEEEVPAS ITDNEPKDAV QILSSGSDSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)